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Comprehensive Analysis of HIV-1 mRNA Transcript Variants and Regulatory Proteins

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This study explores the diverse mRNA transcripts of the HIV-1 genome, identifying key variants including 5'LTR, 3'LTR, and multiple AUG-started readings associated with vital proteins such as Tat, Rev, Vif, Nef, and Env. Through detailed analysis, we assess the structure and function of these transcripts, their regulatory mechanisms, and their implications in viral replication and pathogenesis. Our findings enhance the understanding of HIV-1 biology and could inform therapeutic strategies targeting specific mRNA isoforms.

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Comprehensive Analysis of HIV-1 mRNA Transcript Variants and Regulatory Proteins

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  1. A4a A4b A7 A4c A1 A2 A3 A5 tat pol vpr rev env 5’LTR 3’ LTR rev gag vif tat vpu nef D1 D2 D3 D4 AUG AUG 2-kb mRNA class AUG Vpr 1 Vpr 2 Tat 1 AUG Tat 2 Tat 3 Tat 4 Rev 1 Rev 2 Rev 3 Rev 6 Rev 7 Vif 2 AUG AUG Nef 2 Vpr 3 Nef 3 4-kb mRNA class AUG Nef 4 Tat 5 Nef 5 Tat 6 AUG AUG Env 1 Env 2 Env 3 Env 5 Env 8 9-kb mRNA

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