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Mining text and data on chemicals

Mining text and data on chemicals

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Mining text and data on chemicals

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  1. Mining text and data on chemicals Lars Juhl Jensen

  2. three parts

  3. text mining

  4. data integration

  5. medical records

  6. Part 1text mining

  7. exponential growth

  8. some things are constant

  9. ~45 seconds per paper

  10. information retrieval

  11. find the relevant papers

  12. still too much to read

  13. computer

  14. as smart as a dog

  15. teach it specific tricks

  16. named entity recognition

  17. identify the concepts

  18. small molecules

  19. proteins

  20. diseases

  21. comprehensive lexicon

  22. synonyms

  23. orthographic variation

  24. “black list”

  25. unfortunate names

  26. Reflect

  27. augmented browsing

  28. browser add-on

  29. Pafilis, O’Donoghue, Jensen et al., Nature Biotechnology, 2009 O’Donoghue et al., Journal of Web Semantics, 2010

  30. Firefox

  31. Internet Explorer

  32. Google Chrome

  33. Safari

  34. Utopia Documents

  35. web services

  36. collaboration

  37. SciVerse