POC tutorial3: Annotation

Jan 06, 2013

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POC tutorial3: Annotation

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Distributed Annotation System Version 2

Distributed Annotation System Version 2. Allen Day, UCLA Anthony Cox, EBI Gregg Helt, Affymetrix Andrew Dalke, Dalke Scientific Lincoln Stein, CSHL. Annotation Server. Reference Server. Annotation Server. Annotation Server. AC003027. M10154. AC005122. WI1029. AFM820. AFM1126. WI443.

229 views • 9 slides

Comparative Genomics & Annotation

Comparative Genomics & Annotation. The Foundation of Comparative Genomics Non-Comparative Annotation Three methodological tasks of CG Annotation: Protein Gene Finding RNA Structure Prediction Signal Finding Challenges Empirical Investigations: Genes & Signals

546 views • 28 slides

Survey of Semantic Annotation Platforms

SAC 2005. Survey of Semantic Annotation Platforms. Lawrence Reeve Hyoil Han. Semantic Annotation. Creating semantic labels within documents for the Semantic Web Used to support: Advanced searching (e.g. concept) Information Visualization (using ontology) Reasoning about Web resources

421 views • 20 slides

Melampsora Genome Annotation and Genome Structure Analysis

Melampsora Genome Annotation and Genome Structure Analysis First Annotation Workshop of the Melampsora Genome Consortium. Yao-Cheng Lin Bioinformatics & Evolutionary Genomics VIB Department of Plant Systems Biology, UGent. Overview. Gene prediction (structure annotation)

450 views • 19 slides

Annotation for Hindi PropBank

Annotation for Hindi PropBank. Outline. Introduction to the project Basic linguistic concepts Verb & Argument Making information explicit Null arguments. Tasks to be carried out Tools for annotation Timesheets, tips P ractice. Creation of Resources. For machines rather than humans

335 views • 17 slides

Annotation of Semantic Relations in Patent Documents

Annotation of Semantic Relations in Patent Documents . Valentina Bartalesi Lenzi, Rachele Sprugnoli, and Emanuele Pianta. Outline. Introduction Annotation process Annotation of Part-Whole Relations Annotation of Motion Relations An experiment on the Inter-Coder Agreement

444 views • 25 slides

Annotation

Annotation. Annotation. Annotation is one way to slow down when reading difficult text so that you can understand it better Annotation includes underlining, highlighting, circling drawing arrows, writing in the margins and asking questions you may have

275 views • 6 slides

Community Data Annotation/Curation

Community Data Annotation/Curation. Community Annotation/Curation. Feasibility studies Pick two anatomical areas (thorax, brain) Deliverables Infrastructure/process Distributed atlas Integration needs Visualization Federated database Ontologies Issues Intellectual property

461 views • 29 slides

Prioritization of Avian GO Annotation

Prioritization of Avian GO Annotation. Structural Annotation. Genome Build 2. No. Proteins (NRPD). % predicted proteins. No. Entrez Genes. Species. proteins/gene. Human. 36.3. 36,437. 415,830. 4.91. 11.41. Mouse. 37.1. 64,018. 228,696. 9.28. 3.57.

233 views • 10 slides

Annotator Interface

Annotator Interface. Sharon Diskin GUS 3.0 Workshop June 18-21, 2002. Outline. Current annotation efforts Motivation for new annotation tool Requirements for new annotation tool Thoughts on design and implementation Future plans. Current Annotation Efforts. Overview of Current Efforts.

441 views • 29 slides

Genome Annotation

Genome Annotation. Bioinformatics 301 David Wishart david.wishart@ualberta.ca Notes at: http://wishartlab.com. Objectives*. To demonstrate the growing importance of gene and genome annotation in biology and the role bioinformatics plays

2.09k views • 65 slides

Annotation Presentation Week 10

Annotation Presentation Week 10. Lab Reports. Wrapping up IMG-ACT Genome Annotation. Online notebook should be completed for all 3 genes Final reports are comprised of the imgACT online reports (one for each gene) and a team summary of the project

279 views • 13 slides

Protein Functional Annotation

Protein Functional Annotation. Dr G.P.S. Raghava. Annotation Methods. Annotation by homology (BLAST) requires a large, well annotated database of protein sequences Annotation by sequence composition simple statistical/mathematical methods Annotation by sequence features, profiles or motifs

856 views • 45 slides

Semantic Web

Semantic Web. Generating Semantic Annotations. Where are we?. Agenda. Motivation Technical solution, illustrations, and extensions Semantic annotation of text Semantic annotation of multimedia Large example Summary References. MOTIVATION. Semantic Annotation.

1.03k views • 78 slides

Patent Processing with GATE

Patent Processing with GATE. Kalina Bontcheva, Valentin Tablan University of Sheffield. Outline. Why patent annotation? The data model The annotation guidelines Building the IE pipeline Evaluation Scaling up and optimisation Find the needle in the annotation (hay)stack.

523 views • 37 slides

MAKER Annotation Process Example of Glossina

MAKER Annotation Process Example of Glossina. Karyn Mégy. Dan Hughes. VectorBase http://www.vectorbase.org. Annotation: aims and means. Aims Preliminary Locus rather than exact position Means Automatic annotation By similarity Ab initio Manual annotation By regions

360 views • 19 slides

Dialogue Annotation at SUNY

Dialogue Annotation at SUNY. Hilda Hardy Amiti é s Annotation Workshop LIMSI-CNRS, France July 8-10, 2002. What did we annotate?. Transcriptions of dialogues from 3 folders in the englishPlainTextDialogues.zip archive (dated March 28, 2002): 22mar02, 20 of 60 files (Uzo Enyinna)

439 views • 27 slides

Basics of Genome Annotation

Basics of Genome Annotation. Daniel Standage Biology Department Indiana University. An-no-ta- tion ˌa - nə -ˈ tā- shən . A critical or explanatory note or body of notes added to a text The act of annotating. http:// dictionary.reference.com /browse/ annotation?s =t. Genome annotation.

414 views • 23 slides

NCBI’s Genome Annotation: Overview

NCBI’s Genome Annotation: Overview. Incremental processing Re-annotation ( batch ) Post-annotation review Case studies. NOTE: limiting discussion to annotation of genes and pseudogenes. Donna Maglott, Ph.D. for the RefSeq and Annotation groups. NCBI: Incremental processing.

387 views • 22 slides

Poetry Annotation

Poetry Annotation. Finding literary devices within a work of poetry. Annotating a poem. Texts and poems require many readings and often annotation to clarify the many layers of meaning that the author has created.

301 views • 9 slides

Annotation: A Writing-to-Learn Strategy

Annotation: A Writing-to-Learn Strategy. Jo Ann Hall Greenville High School North Star of Texas Writing Program Summer Institute June 25, 2008. You just don’t know anything unless you can write it. S.I. Hayakawa. Annotation: A tool for transaction. “Rosenblatt has demonstrated that

261 views • 15 slides

DJ Example in UAV Context

DJ Example in UAV Context. Karl Lieberherr. Frame Structure. Frame. X1. X2. X3. X4. X5. A. X6. X7. B. X8. Annotation. Frame Traversal Strategy. from Frame through {A,B} to Annotation. Frame. X1. X2. X3. X4. X5. A. X6. X7. B. X8. Annotation. Selected Paths.

191 views • 8 slides

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POC tutorial3: Annotation

POC tutorial3: Annotation

Presentation Transcript

Distributed Annotation System Version 2

Comparative Genomics &amp; Annotation

Survey of Semantic Annotation Platforms

Melampsora Genome Annotation and Genome Structure Analysis

Annotation for Hindi PropBank

Annotation of Semantic Relations in Patent Documents

Annotation

Community Data Annotation/Curation

Prioritization of Avian GO Annotation

Annotator Interface

Genome Annotation

Annotation Presentation Week 10

Protein Functional Annotation

Semantic Web

Patent Processing with GATE

MAKER Annotation Process Example of Glossina

Dialogue Annotation at SUNY

Basics of Genome Annotation

NCBI’s Genome Annotation: Overview

Poetry Annotation

Annotation: A Writing-to-Learn Strategy

DJ Example in UAV Context

Comparative Genomics & Annotation