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Magnetic Resonance Imaging. Presented by: Mahyar Nirouei. Synopsis of MRI. 1) Put subject in big magnetic field 2) Transmit radio waves into subject [2~10 ms] 3) Turn off radio wave transmitter 4) Receive radio waves re-transmitted by subject 0 5) Convert measured RF data to image.

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Magnetic Resonance Imaging

Presented by: Mahyar Nirouei


Synopsis of mri
Synopsis of MRI

1) Put subject in big magnetic field

2) Transmit radio waves into subject [2~10 ms]

3) Turn off radio wave transmitter

4) Receive radio waves re-transmitted by subject0

5) Convert measured RF data to image


Siemens allegra 3t scanner
Siemens Allegra 3T Scanner

B0 = 3 T = 30,000 gauss

Earth’s magnetic field = 0.5 gauss



Rf coil
RF Coil

  • RF Coils are used to excite the spins and to receive the signal

  • A typical coil is a tuned LC circuit and may be considered a near field antenna


Many factors contribute to mr imaging
Many factors contribute to MR imaging

  • Quantum properties of nuclear spins

  • Radio frequency (RF) excitation properties

  • Tissue relaxation properties

  • Magnetic field strength and gradients

  • Timing of gradients, RF pulses, and signal detection


What kinds of nuclei can be used for nmr
What kinds of nuclei can be used for NMR?

  • Nucleus needs to have 2 properties:

    • Spin

    • charge

  • Nuclei are made of protons and neutrons

    • Both have spin ½

    • Protons have charge

  • Pairs of spins tend to cancel, so only atoms with an odd number of protons or neutrons have spin

    • Good MR nuclei are 1H, 13C, 19F, 23Na, 31P


Hydrogen atoms are best for mri
Hydrogen atoms are best for MRI

  • Biological tissues are predominantly 12C, 16O, 1H, and 14N

  • Hydrogen atom is the only major species that is MR sensitive

  • Hydrogen is the most abundant atom in the body

  • The majority of hydrogen is in water (H2O)

  • Essentially all MRI is hydrogen (proton) imaging


A single proton
A Single Proton

m

There is electric charge

on the surface of the proton, thus creating a small current loop and generating magnetic moment m.

The proton also has mass which generates an

angular momentum

J when it is spinning.

J

+

+

+

Thus proton “magnet” differs from the magnetic bar in that it

also possesses angular momentum caused by spinning.


Magnetic Moment

B

B

I

L

m= tmax / B

= IA

W

L

F

t = mB

= m B sinq

F = IBL

t = IBLW = IBA

Force

Torque


J

m

r

v

Angular Momentum

J = mw=mvr


The magnetic moment and angular momentum are vectors lying along the spin axis

m = gJ

g is the gyromagnetic ratio

g is a constant for a given nucleus


How do protons interact with a magnetic field
How do protons interact with a magnetic field? along the spin axis

  • Moving (spinning) charged particle generates its own little magnetic field

    • Such particles will tend to line up with external magnetic field lines (think of iron filings around a magnet)

  • Spinning particles with mass have angular momentum

    • Angular momentum resists attempts to change the spin orientation (think of a gyroscope)


Ref: www.simplyphysics.com along the spin axis


The energy difference between along the spin axis

the two alignment states depends on the nucleus

  • D E = 2 mz Bo

    D E = hn

  • n = g/2p Bo

    known as Larmor frequency

g/2p = 42.57 MHz / Tesla for proton


Resonance frequencies of common nuclei
Resonance frequencies of common nuclei along the spin axis

Note: Resonance at 1.5T = Larmor frequency X 1.5


Electromagnetic radiation energy
Electromagnetic Radiation Energy along the spin axis

X-Ray, CT

MRI


Mri uses a combination of magnetic and electromagnetic fields
MRI uses a combination of Magnetic and Electromagnetic Fields

  • NMR measures the net magnetization of atomic nuclei in the presence of magnetic fields

  • Magnetization can be manipulated by changing the magnetic field environment (static, gradient, and RF fields)

  • Static magnetic fields don’t change (< 0.1 ppm / hr):

    The main field is static and (nearly) homogeneous

  • RF (radio frequency) fields are electromagnetic fields that oscillate at radio frequencies (tens of millions of times per second)

  • Gradient magnetic fields change gradually over space and can change quickly over time (thousands of times per second)


Radio Frequency Fields Fields

  • RF electromagnetic fields are used to manipulate the magnetization of specific types of atoms

  • This is because some atomic nuclei are sensitive to magnetic fields and their magnetic properties are tuned to particular RF frequencies

  • Externally applied RF waves can be transmitted into a subject to perturb those nuclei

  • Perturbed nuclei will generate RF signals at the same frequency – these can be detected coming out of the subject


Basic Quantum Mechanics Theory of MR Fields

The Effect of Irradiation to the Spin System

Lower

Higher


Basic Quantum Mechanics Theory of MR Fields

Spin System After Irradiation



Net magnetization
Net magnetization Fields

  • Small B0 produces small net magnetization M

  • Larger B0 produces larger net magnetization M, lined up with B0

  • Thermal motionstry to randomize alignment of proton magnets

  • At room temperature, the population ratio of anti-parallel versus parallel protons is roughly 100,000 to 100,006 per Tesla of B0


Quantum vs classical physics
Quantum vs Classical Physics Fields

One can consider the quantum mechanical properties of individual nuclei, but to consider the bulk properties of a whole object it is more useful to use classical physics to consider net magnetization effects.


To measure magnetization we must perturb it
To measure magnetization we must perturb it Fields

  • We can only measure magnetization perpendicular to the B0 field

  • Need to apply energy to tip protons out of alignment

  • Amount of energy needed depends on nucleus and applied field strength (Larmor frequency)

  • The amount of energy added (duration of the RF pulse at the resonant frequency) determines how far the net magnetization will be tipped away from the B0 axis


Precession
Precession Fields

  • Precession refers to a change in the direction of

  • the axis of a rotating object.

  • It occurs when spinning objects experience a moment outside the plane of rotation


w FieldsL

Slope = gyromagnetic ratio

B0

  • Larmor freqency, and is dictated by

  • The speed of precession of a spinning body in a field is called the Larmor frequency, and we know a few things about it

    • Zero when B0 = 0

    • Increases as magnetic field increases

    • We could do an experiment and plot the relationship between B0 and precessional frequency

  • For protons wL is approximately 42 MHz/Tesla

B0


Derivation of precession frequency Fields

  • = m× Bo

  • = dJ / dt

    J = m/g

    dm/dt = g (m× Bo)

m(t) = (mxocos gBot + myosin gBot) x + (myocos gBot - mxosin gBot) y + mzoz

This says that the precession frequency is the

SAME as the larmor frequency


Recording the mr signal
Recording the MR signal Fields

  • Need a receive coil tuned to the same RF frequency as the exciter coil.

  • Measure “free induction decay” of net magnetization

  • Signal oscillates at resonance frequency as net magnetization vector precesses in space

  • Signal amplitude decays as net magnetization gradually realigns with the magnetic field

  • Signal also decays as precessing spins lose coherence, thus reducing net magnetization


Nmr signal decays in time
NMR signal decays in time Fields

  • T1 relaxation – Flipped nuclei realign with the magnetic field

  • T2 relaxation – Flipped nuclei start off all spinning together, but quickly become incoherent (out of phase)

  • T2* relaxation – Disturbances in magnetic field (magnetic susceptibility) increase the rate of spin coherence T2 relaxation

  • The total NMR signal is a combination of the total number of nuclei (proton density), reduced by the T1, T2, and T2* relaxation components


T2 decay
T2* decay Fields

  • Spin coherence is also sensitive to the fact that the magnetic field is not completely uniform

  • Inhomogeneities in the field cause some protons to spin at slightly different frequencies so they lose coherence faster

  • Factors that change local magnetic field (susceptibility) can change T2* decay


Different tissues have different relaxation times. These relaxation time differences can be used to generate image contrast.

  • T1 - Gray/White matter

  • T2 - Tissue/CSF

  • T2* - Susceptibility (functional MRI)


Spatial localization
Spatial Localization relaxation time differences can be used to generate image contrast.

  • Slice selection

    • In a homogeneous magnetic field (B0), an magnetic field (B1) oscillating at or very near the resonant frequency, w, will excite nuclei in the bore of the imaging magnet (Larmor equation):

w = g Bo

38


Spatial localization1
Spatial Localization relaxation time differences can be used to generate image contrast.

  • Slice selection(continued)

    • We can selectively excite nuclei in one slice of tissue by incorporating a third magnetic field: the “gradient” magnetic field. A gradient magnetic field is a small magnetic field superimposed on the static magnetic field. The gradient magnetic field produces a linear change in the total magnetic field.

    • Here, “gradient” means “change in field strength as a function of location in the MRI bore”.

39


Spatial localization2
Spatial Localization relaxation time differences can be used to generate image contrast.

  • Slice selection(continued)

    • Since the gradient field changes in strength as a function of position, we use the term “gradient amplitude” to describe the field:

    • Gradient amplitude = D (field strength) / D (distance)

    • Example units: gauss / cm

40


Spatial localization3
Spatial Localization relaxation time differences can be used to generate image contrast.

  • Slice selection(continued)

    • To recap, we use these magnetic fields in MRI:

    • B0 – large, homogeneous field of superconducting magnet.

    • B1 – temporally-oscillating, RF magnetic field that excites nuclei at resonance.

    • Bg – spatially-varying, small field responsible for the linear variation in the total field.

41


Spatial localization4
Spatial Localization relaxation time differences can be used to generate image contrast.

  • Slice selection(continued)

    • The linear change of the gradient field can be along the Z axis (inferior to superior), the X axis (left to right), the Y axis (anterior to posterior), or any combination (an “oblique” scanning prescription).

    • Switching the gradient magnetic fields on/off produces the MRI acoustic noise.

42


Superconducting magnet

Z relaxation time differences can be used to generate image contrast.

Y

X

Superconducting Magnet

In a typical

superconducting

magnet having a

a horizontal bore,

the Z axis is down

the center of the

bore, the X axis is

horizontal and the

Y axis is vertical.

43


Spatial localization5
Spatial Localization relaxation time differences can be used to generate image contrast.

  • Slice selection example:

    • Q: How does the gradient field affect the resonant frequency?

    • A: The resonant frequency will be different at different locations.

    • Consider a gradient magnetic field of 0.5 Gauss / cm, using a Z gradient superimposed on a 1.5 T static magnetic field (1.5T = 15,000 Gauss).

44


Spatial localization6
Spatial Localization relaxation time differences can be used to generate image contrast.

  • Here’s a picture of the total magnetic field as a function of position:

45


Spatial Localization relaxation time differences can be used to generate image contrast.

  • Recall the Larmor equation:

  • w = g Bo

  • For hydrogen:

  • = 42.58 MHz/Tesla = 42.58 x 106 Hz/Tesla

  • Calculating the center frequency at 1.5 Tesla:

  • w = g Bo

  • w = (42.58 MHz / Tesla)(1.5 Tesla)

  • w = 63.87 MHz

46


Spatial Localization relaxation time differences can be used to generate image contrast.

What are the frequencies at Inferior 20cm and Superior 20cm?

At I 20cm, Btot = 1.499 T:

  • wI = g Btot

  • wI = (42.58 MHz / Tesla)(1.499 Tesla)

  • wI = 63.827 MHz

    At S 20cm, Btot = 1.501 T:

  • wS = g Btot

  • wS = (42.58 MHz / Tesla)(1.501 Tesla)

  • wS = 63.913 MHz

Difference in

frequencies:

.086 MHz

47


Rf bandwidth
RF Bandwidth relaxation time differences can be used to generate image contrast.

  • The RF frequency of the oscillating B1 magnetic field has an associated bandwidth. Rather than oscillating at a single frequency of 63.870 MHz, a range or “bandwidth” of frequencies is present. A typical bandwidth for the oscillating B1 magnetic field is + 1 kHz, thus RFfrequencies from 63.869 MHz to 63.871 MHz are present. The bandwidth of RF frequenciespresent in the oscillating B1 magnetic field is inversely proportional to the duration of the RF pulse.

48


Rf bandwidth continued
RF Bandwidth relaxation time differences can be used to generate image contrast.(continued)

  • There are actually two RF bandwidths are associated with MRI:

  • Transmit and Receive

  • RF Transmit bandwidth ~ +1 kHz affects

  • slice thickness (we are discussing this)

  • RF Receive bandwidth ~ +16 kHz is

  • sometimes adjusted to optimize

  • signal-to-noise in images (more in a later lecture)

49


Rf bandwidth continued1
RF Bandwidth relaxation time differences can be used to generate image contrast.(continued)

50


Rf bandwidth continued2
RF Bandwidth relaxation time differences can be used to generate image contrast.(continued)

  • Where will excited nuclei be located, assuming an 63.87 MHz (+ 1 kHz) RF bandwidth and a 0.5 Gauss / cm gradient field superimposed on a 1.5 Tesla static magnetic field?

  • At the inferior-most position of excitation, w is:

  • (63.87 – 0.001) MHz = 63.869 MHz

  • = (42.58 MHz/Tesla)(B inferior)

    B inferior = 63.869 MHz/(42.58 MHz/T)

  • = 1.4999765 Tesla = 14999.765 Gauss

51


Rf bandwidth continued3
RF Bandwidth relaxation time differences can be used to generate image contrast.(continued)

So, change of field from center to the inferior extent of excitation = (15000 – 14999.765) Gauss

= -0.235 Gauss

The gradient imposes a field change of

0.5 Gauss/cm, so a change of –0.235 Gauss occurs at the following distance from the center:

  • - .235 Gauss

  • .5 Gauss / cm

 - .47 cm

52


Rf bandwidth continued4
RF Bandwidth relaxation time differences can be used to generate image contrast.(continued)

  • Same is true of the superior position:

    63.871 MHz = (42.58 MHz / Tesla)(B superior)

  • B superior = 1.5000235 Tesla = 15000.235 Gauss

.235 Gauss

.5 Gauss / cm

 .47 cm

53


Rf bandwidth continued5
RF Bandwidth relaxation time differences can be used to generate image contrast.(continued)

{

54


Rf bandwidth continued6
RF Bandwidth relaxation time differences can be used to generate image contrast.(continued)

  • A + 1 kHz RF pulse at 63.870 MHz will excite a 9.4 mm thick slice in the presence of a 0.5 Gauss/cm gradient at 1.5 Tesla.

  • The maximum gradient on the GE LX Horizon Echospeed+ is 3.3 Gauss/cm. The maximum gradient on the Siemens Vision is 2.5 Gauss/cm.

  • Slice thickness can be changed with RF bandwidth or gradient magnetic field or both.

55


Rf bandwidth continued7
RF Bandwidth relaxation time differences can be used to generate image contrast.(continued)

At a specific RF bandwidth (D w), a high magnetic

field gradient (line A) results in slice thickness (D zA).

By reducing the magnetic field gradient (line B), the

selected slice thickness increases in width (D zB).

56


Rf bandwidth continued8
RF Bandwidth relaxation time differences can be used to generate image contrast.(continued)

  • An increase in the RF bandwidth applied at a constant magnetic field gradient results in a thicker slice

  • (D zB > D zA).

57


Slice location rf frequency
Slice Location relaxation time differences can be used to generate image contrast.(RF frequency)

  • The location of the selected slice can be moved by changing the center RF frequency (w0B > w0A).

58


Two dimensional fourier transform mri 2dft
Two-Dimensional Fourier Transform MRI relaxation time differences can be used to generate image contrast.(2DFT)

  • Planar imaging - a plane or slice of spins has been selectively excited as shown previously. After the Z gradient and RF pulse have been turned off, (and after a brief rephasing with the Z gradient) all spins in the slice are precessing in phase at the same frequency.

  • A 2Dimensional Fourier Transform (2DFT) technique can now be used to image the plane.

  • After imaging a plane, the RF frequency can be changed to image other planes in order to build up an image volume.

59


Two dimensional fourier transform mri 2dft1
Two-Dimensional Fourier Transform MRI relaxation time differences can be used to generate image contrast.(2DFT)

Q: Once spins in a slice are excited, how does the scanner “observe” the data?

A: The receive coil in the scanner detects the TOTAL transverse magnetization signal in a particular direction, resulting from the SUM of ALL excited spins.

Example #1: one spin case

Receiver Coil

Spin

Transverse received signal over time

60


Two dimensional fourier transform mri 2dft2
Two-Dimensional Fourier Transform MRI relaxation time differences can be used to generate image contrast.(2DFT)

Receiver Coil

Example #2: two spin case, with different frequencies

Spin #1

+

Spin #2

=

Summed signal can be complicated…but, this is useful.

61


2d fourier imaging

Raw data relaxation time differences can be used to generate image contrast.

Processed data

Fourier transform

2D Fourier Imaging


Fourier transform basics
Fourier Transform Basics relaxation time differences can be used to generate image contrast.

In 1-D, we can create a wave with a complicated shape by adding periodic waves of different frequency together.

A

A+B

B

C

A+B+C+D

In this example, we could keep going to create a square wave, if we wanted.

D

A+B+C+D+E+F

E

F

63


Fourier transform basics1
Fourier Transform Basics relaxation time differences can be used to generate image contrast.

This process works in reverse as well: we can decompose a complicated wave into a combination of simple component waves.

The mathematical process for doing this is known as a “Fourier Decomposition”.

64


Fourier transform basics2
Fourier Transform Basics relaxation time differences can be used to generate image contrast.

For each different frequency component, we need to know the amplitude…

…and the phase, to construct a unique wave.

f

f

f

Amplitude change

Phase change

65


Fourier transform basics3
Fourier Transform Basics relaxation time differences can be used to generate image contrast.

So, if spins in an excited slice were prepared such that they precess with a different frequency and phase at each position, the resulting signal could only be constructed with a unique set of magnetization amplitudes from each position.

Thus, we could apply a Fourier transform to our total signal to determine the transverse magnetization at every position.

So, let’s see how we do this…

66


Phase and frequency encoding
Phase and Frequency Encoding relaxation time differences can be used to generate image contrast.

  • Consider an MRI image composed of 9 voxels

  • (3 x 3 matrix)

  • All voxels have the same precessional frequency and are all “in phase” after the slice select gradient and RF pulse.

67


Phase and frequency encoding continued
Phase and Frequency Encoding relaxation time differences can be used to generate image contrast.(continued)

  • 1. Apply a Y gradient or “phase encode gradient”

  • 2. Nuclei in different rows experience different magnetic fields. Nuclei in the highest magnetic field (top row), preceses fastest and advance the farthest (most cycles) in a given time.

68


Frequency encoding
Frequency encoding relaxation time differences can be used to generate image contrast.

During signal reception, a gradient is applied in one direction:

B= B0 + Gxx

m(x)

x

The resonant frequency depends on location, so a Fourier transform of the signal tells us where the nuclei are in one dimension


Phase and frequency encoding continued1
Phase and Frequency Encoding relaxation time differences can be used to generate image contrast.(continued)

  • When the Y “phase encode gradient” is on, spins on the top row have relatively higher precessional frequency and advanced phase. Spins on the bottom row have reduced precessional frequency and retarded phase.

70


Phase and frequency encoding continued2
Phase and Frequency Encoding relaxation time differences can be used to generate image contrast.(continued)

  • 3. Turn off the Y “phase encode gradient”

  • 4. All nuclei resume precessing at the same frequency

  • 5. All nuclei retain their characteristic Y coordinate dependent phase angles

71


Phase and frequency encoding continued3
Phase and Frequency Encoding relaxation time differences can be used to generate image contrast.(continued)

  • 6. A “read out” gradient is applied along the X axis, creating a distribution of precessional frequencies along the X axis.

  • 7. The signal in the RF coil is now sampled in the presence of the X gradient.

72


Phase and frequency encoding continued4
Phase and Frequency Encoding relaxation time differences can be used to generate image contrast.(continued)

  • While the frequency encoding gradient is on, each voxel contributes a unique combination of phase and frequency. The signal induced in the RF coil is measured while the frequency encoding gradient is on.

73


Phase and Frequency Encoding relaxation time differences can be used to generate image contrast.(continued)

Phase-encode gradient

Phase-encoding of these rows occurs by turning a gradient on for a short period of time…

Total magnetic field

Frequency-encode gradient

74


Phase and Frequency Encoding relaxation time differences can be used to generate image contrast.(continued)

Phase-encode gradient

…then, frequency-encoding of the columns occurs by turning a gradient on for a different axis and leaving it on during the readout.

Total magnetic field

Frequency-encode gradient

75


Phase and frequency encoding continued5
Phase and Frequency Encoding relaxation time differences can be used to generate image contrast.(continued)

  • 8. The cycle is repeated with a different setting of the Y phase encoding gradient. For a 256 x 256 matrix, at least 256 samples of the induced signal are measured in the presence of an X frequency encoding gradient. The cycle is repeated with 256 values of the Y phase encoding gradient.

  • 9. After the samples for all rows are taken for every phase-encode cycle, 2D Fourier Transformation is then carried out along the phase-encoded columns and the frequency-encoded rows to produce intensity values for all voxels.

76


Phase and frequency encoding continued6
Phase and Frequency Encoding relaxation time differences can be used to generate image contrast.(continued)

  • A 2DFT can be accomplished around any plane, by choosing the appropriate gradients for slice selection, phase encoding and frequency encoding.

77


K space
k - space relaxation time differences can be used to generate image contrast.

The Fourier transformation acts on the observed “raw data” to form an image. A conventional MRI image consists of a matrix of 256 rows and 256 columns of voxels (an “image matrix”).

The “raw data” before the transformation ALSO consists of values in a 256 x 256 matrix.

78


K space1
k - space relaxation time differences can be used to generate image contrast.

This “raw data” matrix is affectionately known as “k-space”. Two-dimensional Fourier Transformation (2DFT) of the “k-space” produces an image.

  • Each value in the resulting image matrix corresponds to a grey scale intensity indicative of the MR characteristics of the nuclei in the voxels. Rows and columns in the image are said to be “frequency encoded” or “phase encoded”.

79


K space2
k - space relaxation time differences can be used to generate image contrast.

For an MRI image having a matrix of 256 rows and 256 columns of voxels, acquisition of the data requires that the spin population be excited 256 times, using a different magnitude for the phase encoding gradient for each excitation.

80


K space continued
k - space relaxation time differences can be used to generate image contrast.(continued)

  • The top row of k-space would be measured in the presence of a strong positive phase encode gradient.

  • A middle row of k-space would be measured with the phase encode gradient turned off.

  • The bottom row of k-space would conventionally be measured in the presence of a strong negative phase encode gradient.

81


K space continued1
k - space relaxation time differences can be used to generate image contrast.(continued)

  • While the frequency encoding gradient is on, the voltage in the RF coil is measured at least 256 times. The 256 values measured during the first RF pulse are assigned to the first row of the 256 x 256 “raw data” matrix. The 256 values measured for each subsequent RF pulse are assigned to the corresponding row of the matrix.

82


83 relaxation time differences can be used to generate image contrast.


K space continued2
k - space relaxation time differences can be used to generate image contrast.(continued)

  • There are many techniques of “filling” or “traversing” k-space, each of which may convey different imaging advantages. These techniques will reviewed in subsequent sections.

84


K space continued3
k - space relaxation time differences can be used to generate image contrast.(continued)

  • The central row of k-space is measured with the phase encode gradient turned off. An FFT of the data in the central row produces a projection or profile of the object.

85


1D FT relaxation time differences can be used to generate image contrast.

by row

FT

by column

Plot A-t


1D FT relaxation time differences can be used to generate image contrast.

by row

FT

by column

Plot A-t


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