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Collection of user requirements. By: BINF 4360. User Interface. Point and click over text-based commands Warm colors Ability to switch on and off displayed information Combination of menus and toolbars Deep menu options (lots of submenus). User Roles.

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user interface
User Interface
  • Point and click over text-based commands
  • Warm colors
  • Ability to switch on and off displayed information
  • Combination of menus and toolbars
  • Deep menu options (lots of submenus)
user roles
User Roles
  • Administrator, Student, General user roles
  • Everyone should by default have read-only access
  • Ability to have group privileges
  • Ability to change password, security questions
  • For read-only users, they can request to make changes that the Administrator can approve
data input
Data Input
  • Be able to import sequences
    • FASTA, Arlequin, MEGA, .txt
  • Cut and paste sequences
  • DNA and RNA
  • Input is sometimes fragmented
reporting
Reporting
  • Print out search results when searching for sequences
  • Ability to send data to other users
  • Save entered fragments and consensus sequence as a group
  • STR analysis stored
  • Ability to select different output formats
    • Excel, FASTA, Arlequin, MEGA, .txt
administrative control
Administrative Control
  • Ability to grant privileges to users via checkboxes
  • Approve pending user activity requests
  • Add/delete users
  • List all recent activity for users
query
Query
  • Find sequences by case number
  • Find sequences by shared mutations
  • Find sequences by date
  • Query by sample type – bone, tooth, blood, hair
  • Query by name
  • Query by user
  • Ability to query by multiple categories at once, like Google search
archiving
Archiving
  • Automatic data backup
analysis
Analysis
  • Find consensus sequence
  • Be able to find where a sequence starts and ends compared to the reference sequence
  • Pairwise sequence comparison
  • Y chromosome analysis (time permitting)
  • Generate Minimum Spanning Tree
  • Multiple sequence alignment
  • Ability to edit consensus sequence and put into database
extra
Extra
  • Keep track of user activity on sequences
  • Some form of a mail system