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MX: A Portable Data Acquisition and Control Toolkit. William M. Lavender Biological, Chemical, and Physical Sciences Department Illinois Institute of Technology Chicago, Illinois 60616 http://www.imca.aps.anl.gov/mx/ lavender@icarus.csrri.iit.edu. What is MX?.

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mx a portable data acquisition and control toolkit
MX: A Portable Data Acquisitionand Control Toolkit

William M. Lavender

Biological, Chemical, and Physical Sciences Department

Illinois Institute of Technology

Chicago, Illinois 60616

http://www.imca.aps.anl.gov/mx/

lavender@icarus.csrri.iit.edu

what is mx
What is MX?
  • MX is a portable beamline control system.
  • It includes a pair of servers, mxserver and mxupdate, to manage the hardware.
  • Both Tcl/Tk GUI applications and command line based applications are currently supported.
  • Device drivers and core functionality are encapsulated in the libMx library.
  • LibMx is written in ANSI C to maximize its ability to be used from other languages and applications.
what is mx cont
What is MX? (cont.)
  • Both servers and clients use the same libMx library and can use the same device drivers.
  • Client-server operation is not required. This simplifies the debugging of device drivers.
  • MX has its own TCP/IP protocol, but most of MX is independent of the protocol used.
  • Clients can use foreign protocols exclusively, or a mix of MX and foreign protocols.
slide4

Current Users of MX

· MRCAT, APS Sector 10-ID

materials science

· IMCA-CAT, APS Sector 17-ID and 17-BM

macromolecular crystallography

· BioCAT, APS Sector 18-ID

biophysical science

· SER-CAT, APS Sector 22-ID and 22-BM

macromolecular crystallography

· GCPCC Beamline, CAMD

macromolecular crystallography

why i wrote mx
Why I Wrote MX
  • Beamline control software packages have tended to be environment specific and non-portable.
  • Many are centered around a particular interface method, e.g. CAMAC or VME.
  • EPICS seemed to be a less than ideal choice, since it requires a rather high level of expertise to setup, maintain, and develop for.
  • Users sometimes bring in their own equipment that they want to interface to the beamline.
mx control system goals
MX Control System Goals
  • Encapsulate the core functionality in libraries like libMx.
  • Make client-server functionality available.
  • Require that libMx know very little about the application programs invoking it.
  • Localize the knowledge libMx has of device hardware to driver functions with well defined interfaces.
  • Minimize the effort required to implement new device drivers by putting as much functionality as is possible into generic code.
mx control system goals cont
MX Control System Goals (cont.)
  • Emphasize operating system independence.
  • Require only ANSI C and BSD sockets or Winsock.
  • Be able to interoperate with pre-existing beamline control systems.
  • Try to minimize built-in assumptions about the structure of future data acquisition APIs.
  • Do not depend on the presence of software that may not be freely distributed.
  • Make the source code freely available.
mx platforms
MX Platforms
  • Linux 2.0 and 2.2 - GCC
  • SGI Irix 6.3 and 6.5 - SGI C compiler
  • Solaris 2.5 and 2.6 - SPARCompiler C or GCC
  • HP/UX 10.20 - HP/UX C compiler
  • SunOS 4.1.4 - SPARCompiler C
  • MacOS X - GCC
  • Windows 95, 98, NT 4 - Visual C++ 4, 5, or 6
  • MSDOS 6.2 - DJGPP 2.0.2 and Watt32
mx internal architecture
MX Internal Architecture
  • The fundamental object is the MX record.
  • Application programs maintain their set of MX records in a doubly linked list called the MX database.
  • Each motor, scaler, serial port, or other device on a beamline is represented as an individual MX record.
  • MX records are also used to store variables, server connections, and even scan parameters.
  • Application programs control the beamline by invoking the defined functions or methods for each device type.
mx records
MX Records
  • MX records are defined by the typedef MX_RECORD in the header file libMx/mx_rec.h.
  • MX is not fully object oriented since it only has a fairly restricted form of inheritance.
  • MX record types are organized in a fixed hierarchy of superclasses, classes, and types.
  • Each MX record type has an associated MX driver which implements the methods of this record type.
  • Methods are implemented via function tables defined in the MX_DRIVER structure.
slide11

The MX_RECORD Structure

typedef struct mx_record_type {

long mx_superclass; /* MXR_LIST_HEAD, MXR_INTERFACE, etc. */

long mx_class; /* MXI_CAMAC, MXC_MOTOR, etc. */

long mx_type; /* MXT_MTR_E500, MXT_MTR_PANTHER, etc. */

char name[MXU_RECORD_NAME_LENGTH+1];

char label[MXU_LABEL_LENGTH+1];

void *acl;

char acl_description[MXU_ACL_DESCRIPTION_LENGTH+1];

signed long handle;

int precision;

int resynchronize;

long flags;

struct mx_record_type *list_head;

struct mx_record_type *previous_record;

struct mx_record_type *next_record;

void *record_superclass_struct; /* Ptr to MX_SCAN, MX_VARIABLE, etc. */

void *record_class_struct; /* Ptr to MX_CAMAC, MX_MOTOR, etc. */

void *record_type_struct; /* Ptr to MX_DSP6001, MX_E500, etc. */

void *record_function_list; /* Ptr to MX_RECORD_FUNCTION_LIST */

void *superclass_specific_function_list;

void *class_specific_function_list;

long num_record_fields;

MX_RECORD_FIELD *record_field_array;

struct mx_record_type *allocated_by;

long num_groups;

struct mx_record_type **group_array;

long num_parent_records;

struct mx_record_type **parent_record_array;

long num_child_records;

struct mx_record_type **child_record_array;

MX_CLOCK_TICK event_interval;

MX_CLOCK_TICK next_event_time;

void *event_queue; /* Ptr to MXSRV_QUEUED_EVENT */

void *application_ptr;

} MX_RECORD;

slide13

MX Device Types

MX Interface Types

Amplifier

Analog Input

Analog Output

Digital Input

Digital Output

Encoder

Motor

Multichannel Analyzer

Multichannel Encoder

Multichannel Scaler

Relay

Scaler

Table

Timer

CAMAC

Generic

GPIB

Port I/O

RS-232

MX Server Types

TCP/IP

MX Variable Types

Calc

EPICS

Inline

MX

slide14

MX Scan Types

MX has a selection of scan types optimized

for different kinds of experiments.

  • Linear Scan
    • Input Scan
    • Motor Scan
    • Slit Scan
    • q-2q Scan
  • Quick Scan
    • Joerger Quick Scan
    • MCS Quick Scan
  • XAFS Scan

(multiple energy and k regions)

  • List Scan
slide15

MX Motor Drivers

Am9513-based controller

APS undulator (EPICS)

Bruker D8 (prerelease)

Compumotor 6000/6K

DAC motor

Delta Tau PMAC

Delta Tau PMAC (EPICS)

DSP E500

EPICS motor record

IMS Panther HI/HE

Joerger SMC-24

LakeShore 330 temp. ctrl.

McLennan PM-304

MX network motor

National Inst. ValueMotion

Newport MM-3000

Newport MM-4000/4005

OMS VME-58 (Linux)

PI E-662 piezo controller

Pontech STP-100

Radix Databox motor

SCIPE network motor

Soft motor

Velmex VP9000

XIA HSC-1 slit controller

slide16

MX Pseudomotor Drivers

Delta (position difference)

Elapsed time

Linear function

Monochromator

Q = 4psinq/l

Sector 18-ID mono

Slit center or width

Table pseudomotor

- (x, y, z, roll, pitch, yaw)

q-2q pseudomotor

Translation pseudomotor

X-ray energy

X-ray wavelength

X-ray wavenumber

XAFS wavenumber (k)

slide17

MX Monochromator Pseudomotor

The MX monochromator pseudomotor couples the motion

of several groups of dependent motors and devices such that

they track changes in the monochromator angle, q.

Supported dependency types

· Monochromator q(of course)

· Polynomial function of monochromator q

· Polynomial function of monochromator energy

· APS undulator energy

· Fixed exit crystal separation

· Fixed exit crystal translation

· Diffractometer table height

· Diffractometer q

slide18

ADC Table Pseudomotor

· Supports linear x, y, and z translation of the rotation center.

· Supports pure roll, pitch, and yaw motions about the rotation center.

· Uses a small angle approximation for rotations.

slide19

MX Application Programs

MX currently supports writing application programs

in C and Tcl/Tk. Support is planned for Python, C++,

and Labview.

Command line programs

motor - a general data acquisition and control program for MX.

mxget & mxput - shell commands for talking to an MX server.

goniostat - used by MarCCD to control the X-ray energy.

Tcl/Tk GUI programs

imcagui - a protein crystallography GUI capable of setting up

and performing MAD experiments.

optimize - an end-user GUI for performing simple optimizations

of the X-ray intensity.

mxgui - a general data acquisition and control GUI intended for

beamline staff users.

mxcontrol - an MX server control and log display GUI.

mx network protocol
MX Network Protocol
  • MX is bundled with a network protocol and a pair of servers that implement it.
    • mxserver - manages hardware and handles communication with clients.
    • mxupdate - handles automatic save and restore of database parameters.
  • The protocol is designed to be simple to implement and easy to extend.
  • Most of MX does not depend on this protocol and clients are not required to use it.
  • This protocol is included so that MX can be a standalone system.
mx network protocol cont
MX Network Protocol (cont.)
  • MX protocol is an RPC style protocol.
  • Asynchronous callback support is planned but is not fully implemented yet.
  • MX protocol messages have a binary header with an ASCII body.
  • Uses record field names to identify the object of the message. For example, ``theta.position''.
  • Currently 3 types of messages are implemented: get_array_ascii, put_array_ascii, get_field_type. Other types are planned.
  • The protocol is intended to have a simple core, but be extensible by negotiation at runtime.
future plans for mx protocol
Future Plans for MX Protocol
  • Use numeric handles rather that passing record field names.
  • Finish implementation of asynchronous callbacks.
  • Explore passing data using binary XDR format.
  • Add support for automatic resource discovery and browsing of servers.
  • Improve support for security and add ACLs.
mx is transport independent
MX is Transport Independent
  • The driver API does not distinguish between remotely and locally controlled devices.
  • Applications can switch between drivers and protocols just by changing a config file.
  • Servers can be clients and clients can be servers.
  • Clients can simultaneously use several different network protocols.
mx simulated devices
MX Simulated Devices
  • The driver API does not distinguish between real devices and simulated devices.
  • Almost every MX driver type has a simulated driver available.
  • Very useful for offline development and testing of new software.
  • Potentially useful for user training.
  • Can use simulated devices alongside real devices.
slide33

MX Programming API

MX has an extensive API. All of it cannot be shown here,

so we show only motor related functions.

mx_motor_get_position()

mx_motor_is_busy()

mx_motor_positive_limit_hit()

mx_motor_negative_limit_hit()

mx_motor_move_absolute()

mx_motor_array_move_absolute()

mx_wait_for_motor_stop()

mx_wait_for_motor_array_stop()

mx_motor_soft_abort()

mx_motor_immediate_abort()

mx_motor_set_position()

mx_motor_find_home_position()

mx_motor_is_at_home_switch()

mx_motor_constant_velocity_move()

mx_motor_get_speed()

mx_motor_set_speed()

mx_motor_save_speed()

mx_motor_restore_speed()

mx_motor_set_speed_between_positions()

mx_motor_get_acceleration_type()

mx_motor_get_acceleration_parameters()

mx_motor_set_acceleration_parameters()

mx_motor_get_acceleration_time()

mx_motor_get_acceleration_distance()

mx_motor_compute_pseudomotor_position_

from_real_position()

mx_motor_compute_real_position_from_

pseudomotor_position()

mx_motor_compute_extended_scan_range()

mx_motor_get_parameter()

mx_motor_set_parameter()

slide34

Cu K-edge scan in C using MX

#include <stdio.h>

#include "mx_rec.h"

#include "mx_motor.h"

#include "mx_scalr.h"

#include "mx_timer.h"

#define DATABASE_FILENAME "example.dat"

int main() {

MX_RECORD *record_list, *energy_motor_record;

MX_RECORD *i_zero_record, *i_trans_record, *timer_record;

double start, step_size, measurement_time, energy;

int i, num_steps, busy;

long i_zero_value, i_trans_value;

mx_setup_database( &record_list, DATABASE_FILENAME );

energy_motor_record = mx_get_record( record_list, "energy" );

i_zero_record = mx_get_record( record_list, "Io" );

i_trans_record = mx_get_record( record_list, "It" );

timer_record = mx_get_record( record_list, "timer1" );

start = 8950; step_size = 1.0; num_steps = 101; measurement_time = 1.0;

for ( i = 0; i < num_steps; i++ ) {

mx_scaler_clear( i_zero_record );

mx_scaler_clear( i_trans_record );

energy = start + step_size * (double) i;

mx_motor_move_absolute( energy_motor_record, energy, 0 );

mx_timer_start( timer_record, measurement_time );

busy = TRUE;

while ( busy ) {

mx_msleep(10); /* Wait for 10 milliseconds */

mx_timer_is_busy( timer_record, &busy );

}

mx_scaler_read( i_zero_record, &i_zero_value );

mx_scaler_read( i_trans_record, &i_trans_value );

printf( "%10.3f %10lu %10lu\n",

energy, i_zero_value, i_trans_value );

}

exit(0);

}

slide35

Cu K-edge scan in Tcl using MX

#! /opt/mx/bin/mxtclsh

set mxdir "/opt/mx" ; set database_filename "example.dat"

source [ file join $mxdir "lib" "mx.tcl" ]

package require Mx

::Mx::init

set record_list [ Mx::setup_database $database_filename ]

set energy_motor_record [ $record_list get_record "energy" ]

set i_zero_record [ $record_list get_record "Io" ]

set i_trans_record [ $record_list get_record "It" ]

set timer_record [ $record_list get_record "timer1" ]

set start 8950 ; set step_size 1.0 ; set num_steps 101

set measurement_time 1.0

for { set i 0 } { $i < $num_steps } { incr i } {

$i_zero_record clear

$i_trans_record clear

set energy [ expr ( $start + $step_size * $i ) ]

$energy_motor_record move_absolute $energy

set busy 1

while { $busy } {

after 10

set busy [ $energy_motor_record is_busy ]

}

$timer_record start $measurement_time

set busy 1

while { $busy } {

after 10

set busy [ $timer_record is_busy ]

}

set i_zero_value [ $i_zero_record read ]

set i_trans_value [ $i_trans_record read ]

puts [ format "%10.3f %10lu %10lu" \

$energy $i_zero_value $i_trans_value ]

}

slide36

MX Driver Header File

/* ===== McLennan PM304 motor data structures ===== */typedef struct { MX_RECORD *rs232_record; int axis_number; int axis_encoder_number;} MX_PM304;MX_API mx_status_type mxd_pm304_initialize_type( long type );MX_API mx_status_type mxd_pm304_create_record_structures( MX_RECORD *record );MX_API mx_status_type mxd_pm304_finish_record_initialization(MX_RECORD *record );MX_API mx_status_type mxd_pm304_delete_record( MX_RECORD *record );MX_API mx_status_type mxd_pm304_print_motor_structure( FILE *file, MX_RECORD *record );MX_API mx_status_type mxd_pm304_read_parms_from_hardware( MX_RECORD *record);MX_API mx_status_type mxd_pm304_write_parms_to_hardware( MX_RECORD *record );MX_API mx_status_type mxd_pm304_open( MX_RECORD *record );MX_API mx_status_type mxd_pm304_close( MX_RECORD *record );MX_API mx_status_type mxd_pm304_resynchronize( MX_RECORD *record );MX_API mx_status_type mxd_pm304_motor_is_busy( MX_MOTOR *motor );MX_API mx_status_type mxd_pm304_move_absolute( MX_MOTOR *motor );MX_API mx_status_type mxd_pm304_get_position( MX_MOTOR *motor );MX_API mx_status_type mxd_pm304_set_position( MX_MOTOR *motor );MX_API mx_status_type mxd_pm304_soft_abort( MX_MOTOR *motor );MX_API mx_status_type mxd_pm304_immediate_abort( MX_MOTOR *motor );MX_API mx_status_type mxd_pm304_positive_limit_hit( MX_MOTOR *motor );MX_API mx_status_type mxd_pm304_negative_limit_hit( MX_MOTOR *motor );MX_API mx_status_type mxd_pm304_find_home_position( MX_MOTOR *motor );MX_API mx_status_type mxd_pm304_constant_velocity_move( MX_MOTOR *motor );MX_API mx_status_type mxd_pm304_get_parameter( MX_MOTOR *motor );MX_API mx_status_type mxd_pm304_set_parameter( MX_MOTOR *motor );extern MX_RECORD_FUNCTION_LIST mxd_pm304_record_function_list;extern MX_MOTOR_FUNCTION_LIST mxd_pm304_motor_function_list;

slide37

MX Driver Header File (cont.)

/* Define some extra functions for the use of this driver. */MX_API mx_status_type mxd_pm304_command( MX_PM304 *pm304, char *command, char *response, int response_buffer_length, int debug_flag );MX_API mx_status_type mxd_pm304_getline( MX_PM304 *pm304, char *buffer, int buffer_length, int debug_flag );MX_API mx_status_type mxd_pm304_putline( MX_PM304 *pm304, char *buffer, int debug_flag );MX_API mx_status_type mxd_pm304_getc( MX_PM304 *pm304, char *c, int debug_flag );MX_API mx_status_type mxd_pm304_getc_nowait( MX_PM304 *pm304, char *c, int debug_flag );MX_API mx_status_type mxd_pm304_putc( MX_PM304 *pm304, char c, int debug_flag );extern long mxd_pm304_num_record_fields;extern MX_RECORD_FIELD_DEFAULTS *mxd_pm304_rfield_def_ptr;#define MXD_PM304_STANDARD_FIELDS \ {-1, -1, "rs232_record", MXFT_RECORD, NULL, 0, {0}, \ MXF_REC_TYPE_STRUCT, offsetof(MX_PM304, rs232_record), \ {0}, NULL, (MXFF_IN_DESCRIPTION | MXFF_IN_SUMMARY)}, \ \ {-1, -1, "axis_number", MXFT_INT, NULL, 0, {0}, \ MXF_REC_TYPE_STRUCT, offsetof(MX_PM304, axis_number), \ {0}, NULL, (MXFF_IN_DESCRIPTION | MXFF_IN_SUMMARY)}, \ \ {-1, -1, "axis_encoder_number", MXFT_INT, NULL, 0, {0}, \ MXF_REC_TYPE_STRUCT, offsetof(MX_PM304, axis_encoder_number), \ {0}, NULL, (MXFF_IN_DESCRIPTION | MXFF_IN_SUMMARY)}

slide38

An Example MX Driver Function

MX_EXPORT mx_status_type

mxd_pm304_move_absolute( MX_MOTOR *motor )

{

const char fname[] = "mxd_pm304_move_absolute()";

MX_PM304 *pm304;

char command[20];

char response[20];

long motor_steps;

mx_status_type status;

status = mxd_pm304_get_pointers( motor, &pm304, fname );

if ( status.code != MXE_SUCCESS )

return status;

motor_steps = motor->raw_destination.stepper;

/* Format the move command and send it. */

sprintf( command, "ma%ld", motor_steps );

status = mxd_pm304_command( pm304, command, response, sizeof response, PM304_DEBUG );

if ( status.code != MXE_SUCCESS )

return status;

/* Did we get an "OK" response? */

if ( strcmp( response, "OK" ) != 0 ) {

return mx_error( MXE_DEVICE_IO_ERROR, fname,

"Did not get 'OK' response from controller. Instead got '%s'", response );

}

return MX_SUCCESSFUL_RESULT;

}

future plans
Future Plans
  • Server-side improvements
    • Improve mxserver's ability to cope with broken or missing hardware.
    • Add callback support to mxserver.
    • Performance and concurrency improvements.
    • Create servers to export MX services to other control systems (EPICS, CORBA, etc.)
    • GUI database configuration tool.
    • GUI server control tool.
future plans cont
Future Plans (cont.)
  • Client-side improvements
    • Development of more application specific GUIs.
    • Export MX APIs to more languages: (Python, C++, Labview, etc.)
    • Add client-side part of callback support.
  • General improvements
    • Port MX to new platforms: (QNX, VMS, etc. )
    • Collaborate with SER-CAT to develop MX systems based on Delta Tau PMAC controllers.
    • Add new data file formats such as HDF/NeXus.
    • Addition of new drivers.
summary
Summary
  • MX is now in use at 6 APS beamlines, 1 CAMD beamline, and in X-ray labs at IIT.
  • Several beamlines at APS, ALS, NSLS, and CLS have expressed interest.
  • Runs on a variety of hardware platforms.
  • Designed to interoperate with other control systems and user interfaces.
  • We are interested in collaborating with other groups on the further development and application of MX.
slide42

Acknowledgements

A. Howard IMCA-CAT, IIT

J. Chrzas IMCA-CAT, IIT

L. Keefe IMCA-CAT, IIT

C. Segre MRCAT, IIT

B. Bunker MRCAT, Notre Dame

N. Leyarovska MRCAT, IIT

H. Tostmann MRCAT, Univ. of Florida

J. Terry MRCAT, IIT

J. Kropf MRCAT, Argonne Natl. Lab.

G. Bunker BioCAT, IIT

R. Fischetti BioCAT, IIT

J. Fait SER-CAT, Univ. of Georgia

G. Rosenbaum SER-CAT, Univ. of Georgia

J. Quintana DND-CAT, Northwestern

E. Westbrook ALS Beamline 4.2.2, MBC

M. White GCPCC beamline at CAMD,

Univ. of Texas Medical Branch