1 / 6

Annotation of Tomato

Annotation of Tomato. Stephane Rombauts. Bioinformatics & Evolutionary Genomics Ghent, Belgium. Wageningen 18/09/2004. Contribution to the project. Structural gene prediction Genome structure analyses Provide to EU-SOL-community with the genemodels as soon as ready

bertiej
Download Presentation

Annotation of Tomato

An Image/Link below is provided (as is) to download presentation Download Policy: Content on the Website is provided to you AS IS for your information and personal use and may not be sold / licensed / shared on other websites without getting consent from its author. Content is provided to you AS IS for your information and personal use only. Download presentation by click this link. While downloading, if for some reason you are not able to download a presentation, the publisher may have deleted the file from their server. During download, if you can't get a presentation, the file might be deleted by the publisher.

E N D

Presentation Transcript

  1. Annotation of Tomato Stephane Rombauts Bioinformatics & Evolutionary Genomics Ghent, Belgium Wageningen 18/09/2004

  2. Contribution to the project • Structural gene prediction • Genome structure analyses • Provide to EU-SOL-community with the genemodels as soon as ready • Provide annotation tools to users

  3. Structural annotation • Involves: • Build training set for software training • Build a tomato/solanaceae-specific EuGene platform • Identify and annotate transposable elements, as those interfere with gene prediction • Predict ncRNAs (tRNAs, rRNAs, microRNAs)

  4. Genome structure • Analysis of whole genome structure using i-ADHoRe. • Provides overview of block duplications throughout the different available plant genomes • Will provide extensive orthologous genes between plant genomes.

  5. Data display Show data through Gbrowse (= Genome annotation browser) and share it through LDAS or bioMoby Restricted access for consortium during project, World wide if OK with consortium after project completion

  6. Bioinformatics & Evolutionary Genomics Yves Van de Peer Pierre Rouze Eric Bonnet(miRNAs, DB, cluster administrator) Dirk Gevers(procaryotes, genome organization) Jeroen Raes(gene families, phylogeny) Carine Serizet* (Arabidopsis genome annotation) Jan Wuyts(DNA & Protein structures, miRNA) genome organization Cedric Simillion Klaas Vandepoele Wouter Devos* Cindy Martens Computer scientist Sven Degroeve Yvan Saeys Guy Baele Dirk Vandycke (extrinsic annotation) Stefanie Debodt(gene families , phylogeny) Tine Casneuf(pathways & gene expression) Kobe Florquin(Promoter prediction) Lieven Sterck(poplar genome) Steven Robbens(algae genomes) Stephane Rombauts(genome annotation, promoters, DB) Francis Dierick(web-applications, DB) Martin Kuiper(head of Computational biology) Steven Maere(pathways) Steven Vercruysse(clustering) Elena Tsiporkova http://www.psb.ugent.be/bioinformatics/

More Related