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Bsml

Subset of BSML currently implemented as elements in the Perl Object Layer for use with genomic annotation documents. Bsml. Definitions. Sequences. Sequence. Attribute. Feature-tables. Seq-data. Feature-table. Reference. Feature. RefAuthors. RefTitle. RefJournal. Qualifier.

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Bsml

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  1. Subset of BSML currently implemented as elements in the Perl Object Layer for use with genomic annotation documents. Bsml Definitions Sequences Sequence Attribute Feature-tables Seq-data Feature-table Reference Feature RefAuthors RefTitle RefJournal Qualifier Interval-loc Site-loc

  2. BsmlDoc • add/dropBsmlSequence() • returnSequenceListR() • returnSequence( index ) • Common Methods via BsmlElement • add/set/dropBsmlAttr() • returnBsmlAttrHashR() • add/set/dropattr() • returnattrHashR() • write() Bsml • BsmlFeatureTable • add/dropBsmlReference() • returnBsmlReferenceListR() • returnBsmlReference( index ) • add/dropBsmlFeature() • returnBsmlFeatureListR() • returnBsmlFeature( index ) Definitions • BsmlSequence • add/dropBsmlFeatureTable() • returnFeatureTableListR() • returnFeatureTable( index ) • add/set/dropBsmlSeqData() • returnSeqData() Sequences Sequence Attribute Feature-tables Seq-data • BsmlReference • add/set/dropBsmlRefAuthors() • returnBsmlRefAuthor() • add/set/dropBsmlRefTitle() • returnBsmlRefTitle() • add/set/dropBsmlRefJournal() • returnBsmlRefJournal() • BsmlFeature • add/set/dropBsmlQualifier() • returnBsmlQualifiersHashR() • add/set/dropBsmlSiteLoc() • returnBsmlSiteLocListR() • add/set/dropBsmlIntervalLoc() • returnBsmlIntervalLocListR() Feature-table Reference Feature RefAuthors RefTitle RefJournal Qualifier Interval-loc Site-loc

  3. BsmlDoc Bsml Definitions Sequences Tables • BsmlSeqPairAlignment BsmlSequence Seq-pair-alignment Sequence • BsmlSeqPairRun Seq-pair-run

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