1 / 21

ground state

Ball and Stick representation. Tyr 42. Glu 46. Arg 52. Chr. Phe 96. Try 98. Pro 68. ground state. early intermediate. late intermediate. WT. Y42F. white light. UV light. Ribbon drawings and Topology Diagrams. Surface representations. Solvent excluded surface “Molecular surface”.

alka
Download Presentation

ground state

An Image/Link below is provided (as is) to download presentation Download Policy: Content on the Website is provided to you AS IS for your information and personal use and may not be sold / licensed / shared on other websites without getting consent from its author. Content is provided to you AS IS for your information and personal use only. Download presentation by click this link. While downloading, if for some reason you are not able to download a presentation, the publisher may have deleted the file from their server. During download, if you can't get a presentation, the file might be deleted by the publisher.

E N D

Presentation Transcript

  1. Ball and Stick representation Tyr 42 Glu 46 Arg 52 Chr Phe 96 Try 98 Pro 68 ground state early intermediate late intermediate

  2. WT Y42F white light UV light

  3. Ribbon drawings and Topology Diagrams

  4. Surface representations Solvent excluded surface “Molecular surface” Probe Sphere Solvent accessible surface

  5. The difference between the solvent accessible surface and the Van der Waals surface can be substantial

  6. Visualizing surface curvature Idealized B-DNA and the crystal structure of a short docecamer

  7. Electrostatic Potential Surfaces Acetyl choline Net positive charge Acetyl choline esterase

  8. Analyzing packing efficiency PROBE written by Richardson Lab

  9. Tyr 42 Glu 46 Arg 52 Chr Phe 96 Try 98 Pro 68 ground state early intermediate late intermediate

  10. 2.1 Å 2.8 Å Tyr 98

  11. [ ] U11 U12 U13 U21U22 U23 U31 U32U33 3 Eigenvectors 3 Eigenvalues From Eigenvalues: shape of the ellipse i.e. s of a normal distribution From Eigenvectors: orientation of ellipse in space 50% is at ~ 1.2 s

More Related