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Gramene Web Tour and Usage Statistics

Gramene Web Tour and Usage Statistics. Chengzhi Liang SAB meeting, San Diego Jan 13, 2006. Outline. Overview of data type and website Search interfaces Help docs Genome Browser examples and case study Web usage statistics. Gramene Data Summary. Pathways. Gramene Home Page.

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Gramene Web Tour and Usage Statistics

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  1. Gramene Web Tour and Usage Statistics Chengzhi Liang SAB meeting, San Diego Jan 13, 2006

  2. Outline • Overview of data type and website • Search interfaces • Help docs • Genome Browser examples and case study • Web usage statistics

  3. Gramene Data Summary Pathways

  4. Gramene Home Page

  5. Gramene Navigation

  6. Site Map

  7. Data Modules and Search • Search within each module • General site search • BLAST search • GrameneMart search

  8. General Search Home Page All other pages

  9. Module Searches

  10. Genomes

  11. Maps

  12. Markers

  13. QTL

  14. Genes

  15. Proteins

  16. Ontologies Search or Browse

  17. Literature

  18. BLAST Search

  19. GrameneMart Search

  20. Help • Tutorials • FAQ • Glossary • Help docs • Tips

  21. Tutorials

  22. FAQ

  23. Glossary

  24. Tips

  25. Outreach • Database Promotion and Education • Workshops • Posters • Publications • Support • Feedback • Email • One-on-one at workshops

  26. Species Pages

  27. Some Genome Browser Details • Views • Genes, Orthologs • Synteny • Xrefs to other modules

  28. Rice Genome Home

  29. Browser (Gene Example)

  30. Gene Page

  31. Othologous genes

  32. Browser

  33. Jump to CMap

  34. Rice Genome Home To MapView

  35. Browser MapView

  36. Rice Genome Home Compara

  37. Synteny (Compara)

  38. Synteny

  39. Case Study • Question: for a rice QTL, how can we get all genes covered by this QTL? • Eg, a rice spike sterility QTL • Based on features on dev site only • Will be in next release

  40. An QTL Example

  41. QTL Track

  42. Export data

  43. Export Data (1)

  44. Export Data (2)

  45. Export Data (3)

  46. Maize Synteny to Rice

  47. Example of Using GrameneMart

  48. GrameneMart (2)

  49. GrameneMart (3)

  50. GrameneMart(4)

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