1 / 15

Be lgian B iodiversity I nformation F acility BeBIF The Belgian National Node of the worldwide biodiversity network G

Be lgian B iodiversity I nformation F acility BeBIF The Belgian National Node of the worldwide biodiversity network GBIF http://www.be.gbif.net. In collaboration with Hendrick Segers from the Belgium Biodiversity Platform http://www.biodiversity .be.

PamelaLan
Download Presentation

Be lgian B iodiversity I nformation F acility BeBIF The Belgian National Node of the worldwide biodiversity network G

An Image/Link below is provided (as is) to download presentation Download Policy: Content on the Website is provided to you AS IS for your information and personal use and may not be sold / licensed / shared on other websites without getting consent from its author. Content is provided to you AS IS for your information and personal use only. Download presentation by click this link. While downloading, if for some reason you are not able to download a presentation, the publisher may have deleted the file from their server. During download, if you can't get a presentation, the file might be deleted by the publisher.

E N D

Presentation Transcript

  1. Belgian Biodiversity Information Facility BeBIF The Belgian National Node of the worldwide biodiversity network GBIF http://www.be.gbif.net In collaboration with Hendrick Segers from the Belgium Biodiversity Platform http://www.biodiversity .be TDWG (Portugal, October 2003)

  2. A Phylogenetical Tree to Locate Species … Puma concolor (Linnaeus, 1771) ©www.animalsoftherainforest.org TDWG (Portugal, October 2003)

  3. A Phylogenetical Tree to Locate Species … Puma concolor (Linnaeus, 1771) Classification* Kingdom Phylum Class Order Family Genus Species Animalia Chordata Mammalia Carnivora Felidae Puma concolor ©www.animalsoftherainforest.org * Folowing the Catalogue of Life TDWG (Portugal, October 2003)

  4. Classification* Kingdom Phylum Class Order Family Genus Species Animalia Chordata Mammalia Carnivora Felidae Puma concolor * Folowing the Catalogue of Life Other names Mountain lion, Cougar, Puma (English) Puma (French) Puma, Silberlöwe (German) Léon, Léon colorado, Léon de montaña (Spanish) Onça vermelha, Onça parda suçuarana (Brazilian - Portugese) … © 1996 IUCN - The World Conservation Union A Phylogenetical Tree to Locate Species … Puma concolor (Linnaeus, 1771) ©www.animalsoftherainforest.org TDWG (Portugal, October 2003)

  5. Classification* Other names Mountain lion, Cougar, Puma (English) Puma (French) Puma, Silberlöwe (German) Léon, Léon colorado, Léon de montaña (Spanish) Onça vermelha, Onça parda suçuarana (Brazilian - Portugese) … Kingdom Phylum Class Order Family Genus Species Animalia Chordata Mammalia Carnivora Felidae Puma concolor © 1996 IUCN - The World Conservation Union * Folowing the Catalogue of Life Synonyms * Folowing the Catalogue of Life A Phylogenetical Tree to Locate Species … Puma concolor (Linnaeus, 1771) ©www.animalsoftherainforest.org Felis californica May, 1896 Felis concolor Linnaeus, 1771 Felis couguar Kerr, 1792 Felis hippolestes Merriam, 1897 Felis improcera Phillips, 1912 TDWG (Portugal, October 2003)

  6. Classification* Kingdom Phylum Class Order Family Genus Species Animalia Chordata Mammalia Carnivora Felidae Puma concolor * Folowing the Catalogue of Life From information to XML storage • <Taxonomy > • <Kingdom >Animalia</Kingdom > • <Phylum >Chordata</Phylum > • <Class >Mammalia</Class > • <Order >Carnivora</Order > • <Family >Felidae</Family > • <Genus >Puma</Genus > • <Species >concolor</Species > • <Authors > • <Author > • <Name >Linnaeus, 1771</Name > • </Author > • </Authors > • </Taxonomy > TDWG (Portugal, October 2003)

  7. From information to XML storage <Synonym ID="ITS-180587" > <Name >Felis concolor </Name > <Authors > <Author > <Name >Linnaeus, 1771</Name > </Author > </Authors > <Status >unambiguous synonym</Status > <DateUpdated >14/10/1998</DateUpdated > </Synonym > <Synonym ID="ITS-203563" > <Name >Felis improcera</Name > <Authors > <Author > <Name >Phillipe, 1912</Name > </Author > </Authors > <Status >unambiguous synonym </Status > <DateUpdated >27/01/1998</DateUpdated > </Synonym > Synonyms Felis californica May, 1896 Felis concolor Linnaeus, 1771 Felis couguar Kerr, 1792 Felis hippolestes Merriam, 1897 Felis improcera Phillips, 1912 * Folowing the Catalogue of Life * Folowing the Catalogue of Life TDWG (Portugal, October 2003)

  8. Other names From information to XML storage <CommonName > <Name >Mountain lion</Name > <Language >English</Language > <Country >USA</Country > <Provider >ITIS</Provider > <RefBiblio >NA</RefBiblio > <DateUpdated >27/01/1998</DateUpdated > </CommonName > <CommonName > <Name >Florida panther</Name > <Language >English</Language > <Country >USA</Country > <Provider >ITIS</Provider > <RefBiblio >NA</RefBiblio > <DateUpdated >27/01/1998</DateUpdated > </CommonName > Mountain lion, Cougar, Puma (English) Puma (French) Puma, Silberlöwe (German) Léon, Léon colorado, Léon de montaña (Spanish) Onça vermelha, Onça parda suçuarana (Brazil - Portugese) … © 1996 IUCN - The World Conservation Union * Folowing the Catalogue of Life TDWG (Portugal, October 2003)

  9. The XML file • <species ID="Puma concolor“> • <Provider>ITIS</Provider> • <Taxonomy > • <Kingdom >Animalia</Kingdom > • <Phylum >Chordata</Phylum > • … • </Taxonomy > • <Synonyms> • <Synonym ID="ITS-180587" > • <Name >Felis concolor </Name > • … • <DateUpdated >14/10/1998</DateUpdated > • </Synonym > • … • <Synonym ID="ITS-202393" > • <Name >Felis concolor coryi</Name > • ... • <DateUpdated >27/01/1998</DateUpdated > • </Synonym > • <Synonyms> • <CommonNames> • <CommonName > • <Name >Mountain lion</Name > • … • </CommonName > • <CommonName > • <Name >Florida panther</Name > • … • </CommonName > • <CommonNames> • </species> TDWG (Portugal, October 2003)

  10. Classification* Classification* Classification* Kingdom Phylum Class Order Family Genus Species Animalia Chordata Mammalia Carnivora Felidae Puma concolor Kingdom Phylum Subphylum Class Subclass Infraclass Order Suborder Family Subfamily Genus Species Kingdom Phylum Class Subclass Order Suborder Superfamily Family Subfamily Genus Species Animalia Chordata Vertebrata Mammalia Theria Eutheria Carnivora Feliformia Felidae Felinae Puma concolor Animalia Nematoda Adenophorea Chromadoria Chromadorida Chromadorina Chromadoroidea Chromadoridae Spilipherinae Acantholaimus setosus * Folowing the Catalogue of Life * Folowing ITIS * Folowing BIANZO Complexity in Classification ©www.animalsoftherainforest.org TDWG (Portugal, October 2003)

  11. Classification* Kingdom Phylum Subphylum Class Subclass Infraclass Order Suborder Family Subfamily Genus Species Kingdom Phylum Class Subclass Order Suborder Superfamily Family Subfamily Genus Species Animalia Chordata Vertebrata Mammalia Theria Eutheria Carnivora Feliformia Felidae Felinae Puma concolor Animalia Nematoda Adenophorea Chromadoria Chromadorida Chromadorina Chromadoroidea Chromadoridae Spilipherinae Acantholaimus setosus Classification* * Folowing ITIS * Folowing BIANZO Complexity in Classification • <Taxonomy > • <Kingdom >Animalia</Kingdom > • <Phylum >Chordata</Phylum > • <Subphylum> Vertebrata</Subphylum> • <Class >Mammalia</Class > • <Subclass>Theria</ Subclass> • <Infraclass>Eutheria</ Infraclass> • <Order >Carnivora</Order > • <Suborder>Feliformia </Suborder> • <Family >Felidae</Family > • <Subfamily>Felinae </Subfamily> • <Genus >Puma</Genus > • <Species >concolor</Species > • </Taxonomy > • <Taxonomy > • <Kingdom >Animalia</Kingdom > • <Phylum >Nematoda</Phylum > • <Class >Adenophorea</Class > • <Subclass >Chromadoria</Subclass > • <Order >Chromadorida</Order > • <Suborder >Chromadorina</Suborder > • <Superfamily >Chromadoroidea</Superfamily > • <Family >Chromadoridae</Family > • <Subfamily >Spilipherinae</Subfamily > • <Genus >Acantholaimus</Genus > • <Species >setosus</Species > • </Taxonomy > TDWG (Portugal, October 2003)

  12. Classification* Kingdom Phylum Subphylum Class Subclass Infraclass Order Suborder Family Subfamily Genus Species Kingdom Phylum Class Subclass Order Suborder Superfamily Family Subfamily Genus Species Animalia Chordata Vertebrata Mammalia Theria Eutheria Carnivora Feliformia Felidae Felinae Puma concolor Animalia Nematoda Adenophorea Chromadoria Chromadorida Chromadorina Chromadoroidea Chromadoridae Spilipherinae Acantholaimus setosus Classification* * Folowing ITIS * Folowing BIANZO Complexity in Classification • <Taxonomy > • <Kingdom >Animalia</Kingdom > • <Phylum >Chordata</Phylum > • <Subphylum> Vertebrata</Subphylum> • <Class >Mammalia</Class > • <Subclass>Theria</ Subclass> • <Infraclass>Eutheria</ Infraclass> • <Order >Carnivora</Order > • <Suborder>Feliformia </Suborder> • <Family >Felidae</Family > • <Subfamily>Felinae </Subfamily> • <Genus >Puma</Genus > • <Species >concolor</Species > • </Taxonomy > • <Taxonomy > • <Kingdom >Animalia</Kingdom > • <Phylum >Nematoda</Phylum > • <Class >Adenophorea</Class > • <Subclass >Chromadoria</Subclass > • <Order >Chromadorida</Order > • <Suborder >Chromadorina</Suborder > • <Superfamily >Chromadoroidea</Superfamily > • <Family >Chromadoridae</Family > • <Subfamily >Spilipherinae</Subfamily > • <Genus >Acantholaimus</Genus > • <Species >setosus</Species > • </Taxonomy > TDWG (Portugal, October 2003)

  13. <Taxonomy > <Kingdom >Animalia</Kingdom > <Phylum >Chordata</Phylum > … <Genus >Abramis</Genus > <Species >bjoerkna</Species > <Authors > <Author > <Name >Linnaeus, 1758</Name > </Author > </Authors > </Taxonomy > <Taxonomy > <Kingdom >Missing</Kingdom > <Phylum >Missing</Phylum > … <Genus >Genus</Genus > <Species >species</Species > <Authors > <Author > <Name >Linnaeus, 1758</Name > </Author > </Authors > </Taxonomy > COL Classification + ECAT From Datanode To ECAT (GBIF) Species_ID Genus Name Species Name Author Year Common English Name Common French Name fish0001 Abramis bjoerkna Linnaeus 1758 White Bream Brème bordelière fish0002 Abramis brama Linnaeus 1758 Common BreamBrème commune fish0003 Alburnoides bipunctatus Bloch 1782 Chub Ablette spirlin fish0004 Alburnus alburnus Linnaeus 1758 Bleak Ablette commune P. Mergen ANTLR Java tool for file parsing TDWG (Portugal, October 2003)

  14. The XML Schema WWW.BE.GBIF.NET TDWG (Portugal, October 2003)

  15. How to reach BeBIF http://www.be.gbif.net http://www.be.gbif.net/services/Projects http://www.gbif.org For any questions or feed-back … Belgian Biodiversity Information Facility (BeBIF) Université Libre de Bruxelles Campus de la Plaine CP 257 Bâtiment NO, Bureau 4 O4 210 (Niveau 4) Boulevard du Triomphe, entrée ULB 2 B-1050 Bruxelles Bebif@ben.vub.ac.be Tél. : +32 2 650 57 51 - Fax : +32 2 650 5124 TDWG (Portugal, October 2003)

More Related