CSC, Dec.15-16,2005 . Cytoscape Team. Benno Schwikowski Melissa Cline Andrea Splendiadi Lee Hood Richard Bonneau Rowan Christmas Iliana Avila-Campillo Past contributors: Larissa Kamenkovich Andrew Markiel Paul Shannon. Trey Ideker Mark Anderson Nerius Landys Ryan Kelley
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Biological network data
Thursday pm: companion resources for network analysis
Friday am: mRNA Expression
Expression & text mining & GO
Friday pm: advanced topics in network topology
Modules and complexes
Protein domain networks, future directions, feedback.Schedule
Motivation: most biological processes are not performed by a single, independent macromolecule
Cytoscape is a freely-available (open-source, java-based) bioinformatics software platform forvisualizing biological networks (e.g. molecular interaction networks) andanalyzing networks with gene expression profiles and other state data.