How to use geo
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How to use GEO. GEO datasets. Go to http://www.ncbi.nlm.nih.gov/ Select ‘GEO datasets’ Keyword : Hepatoma cell lines, homo. GSE8351. GSE, GPL, GSM. GPL. GSM. GPL5452 – view full table. 67 samples - mainly HCC samples. Sample GSM206985. G000002 0.065540587 G000003 0.053925988

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How to use GEO

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How to use GEO


GEO datasets

  • Go to http://www.ncbi.nlm.nih.gov/

  • Select ‘GEO datasets’

  • Keyword : Hepatoma cell lines, homo


GSE8351


GSE, GPL, GSM

GPL

GSM


GPL5452 – view full table


67 samples - mainly HCC samples


Sample GSM206985


  • G000002 0.065540587

  • G000003 0.053925988

  • G000004 0.031904168


Search GEO datasets for “GSE3536”

Title : Hepatoma cell lines vs. Universal control 3


GSE3536


GPL2913 – view full table


36 samples


GSM81024 HepG2 vs. Universal control 5


GEO Profiles - http://www.ncbi.nlm.nih.gov/

Step2:在此鍵入你所想收尋之關鍵字如:

GATA6 (gene name ) AND "Homo Sapiens" [ORGN] AND GDS596 (Accession)

Step1:選擇GEO Profiles


Search result

可點進去看tissue分佈

查詢後,有些得出許多結果,依user所要的資料去選擇,用基因所對應的NM編號來選。


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