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EuroPhysiome Project communication problem:. P ublication of simulation models. Simulation model requires new type of publications !. How insure and facilitate reproducibility of simulation model (like experimental sciences) ?. Advantages It is archivable , available in libraries .

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p ublication of simulation models

EuroPhysiome Project communication problem:

Publication of simulation models

Simulation model requires

new type of publications!

How insure and facilitate reproducibility of simulation model

(like experimental sciences)?

printed journal
Advantages

It is archivable, available in libraries.

It is the scientific publication source.

Drawbacks

Theextent of 10-15 pages in a typical journal is often insufficient for detailed description of a model.

Confusing typographic errors can appear in equations and published graphs

Printed journal
webzine
Advantages

Unlimited extension is available to detailed description of the model.

It allows an interactive discussion

It is searchable by internet technologies (like Google Scholar etc.)

Drawbacks

It is volatile – there’s no guarantee that older issues are still available on the web.

It is not available in libraries

Therefore - it is not used as a primary scientific publication source.

Webzine
webzine journal
Advantages

Unlimited extension is available to detailed description of the model.

It allows an interactive discussion

Webzine Journal

Advantages

  • It is archivable, available in libraries.
  • It is the scientific publication source.

PHYSIOME WEBZINE JOURNALshould combine the advantages of both of these types of publication and eliminate their drawbacks

slide5

Physiome Webzine Journal

(

obligatory

appendix

)

Detailed

model

description

(

symbolic

explanation

all

model

equations

Periodically

coefficients, values, initial conditions etc.)

frozen

into

DVD ROM

appendices

)

(

optional

Source

code

, more

detailed

explanation

of

model

assumption

etc

.

Periodically

fr

ozen

into

printed

Scientific

article

journal

Moderated web discussion

slide6

Physiome Webzine Journal

PWJ - one of the EuroPhysiome publication tools?

Initiative proposal

Call for reviewers, papers for pilot issue

BAJT servis publishing house & Charles University, Prague

[email protected]

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