'Suffix trie' presentation slideshows

MUMmer: fast alignment of large-scale DNA and protein sequences

1.81k views • 65 slides

Sparse Compact Directed Acyclic Word Graphs

Sparse Compact Directed Acyclic Word Graphs. Shunsuke Inenaga (Japan Society for the Promotion of Science & Kyushu University) Masayuki Takeda (Kyushu University & Japan Science and Technology Agency). Traditional Pattern Matching Problem. Given ? text T in S * and pattern P in S *

650 views • 44 slides

Finite State Automata and Tries

398 views • 29 slides

On-line Linear-time Construction of Word Suffix Trees

On-line Linear-time Construction of Word Suffix Trees. Shunsuke Inenaga (Japan Society for the Promotion of Science & Kyushu University) Masayuki Takeda (Kyushu University & JST). Pattern Searching Problem. Given ? text T in S * and pattern P in S *

431 views • 29 slides

Indexed Search Tree (Trie)

Indexed Search Tree (Trie). Nelson Padua-Perez Chau-Wen Tseng Department of Computer Science University of Maryland, College Park. Indexed Search Tree ( Trie). Special case of tree Applicable when Key C can be decomposed into a sequence of subkeys C 1 , C 2 , … C n

416 views • 23 slides

A clustering method for repeat analysis in DNA sequences

A clustering method for repeat analysis in DNA sequences. Molecular Biology & Phylogeny Laboratory ?? 1 ? ???. A clustering method for repeat analysis in DNA sequences. Natalia Volfovsky, Brian J Haas and Steven L Salzberg The Institute for Genomic Research, USA Genome Biology 2001.

199 views • 19 slides

Trie/Suffix Trie/Suffix Tree

Trie/Suffix Trie/Suffix Tree. Trie.

342 views • 10 slides

Trie/Suffix Trie/Suffix Tree

Trie/Suffix Trie/Suffix Tree. Trie.

132 views • 10 slides