'Search sequence' presentation slideshows

CASARA NATIONAL NAVIGATOR COURSE Search and Rescue Procedures

1.17k views • 102 slides

Recap

469 views • 38 slides

Alignment methods and database searching

Alignment methods and database searching. June 19, 2003 Learning objectives- Database searching algorithms. Understand how the Needleman-Wunsch method of optimal sequence alignment works. Understand how Smith-Waterman local alignment program works. Assignment of intern sites.

465 views • 30 slides

Searching Sequence Databases

Algorithms for Bioinformatics. Searching Sequence Databases. Database Searching. How can we find a particular short sequence in a database of sequences (or one HUGE sequence)? Problem is identical to local sequence alignment, but on a much larger scale.

307 views • 19 slides

Whole genome alignments

Whole genome alignments. Genome 559: Introduction to Statistical and Computational Genomics Prof. James H. Thomas. Review. What a score matrix is and how to calculate and use one. Why an affine gap penalty is desirable. How to align sequences using dynamic programming.

297 views • 18 slides

Whole genome alignments

Whole genome alignments. http://faculty.washington.edu/jht/GS559_2012/. Genome 559: Introduction to Statistical and Computational Genomics Prof. James H. Thomas. Problem set 3 will be posted by tonight. The Python part may take you a LONG time!. Unscaled EVD equation. characteristic width.

256 views • 17 slides

An analysis framework for search sequences

222 views • 9 slides

Searching Sequence Databases

221 views • 8 slides

Searching Sequence Databases

181 views • 8 slides