'Reference sequence' presentation slideshows

CSCE 230, Fall 2013 Chapter 8 Memory Hierarchy

Mehmet Can Vuran, Instructor University of Nebraska-Lincoln. CSCE 230, Fall 2013 Chapter 8 Memory Hierarchy. Acknowledgement: Overheads adapted from those provided by the authors of the textbook. Genesis *.

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NCBI Human Genome Resources

NCBI Human Genome Resources. American Society for Cell Biology. NCBI Booth: 666. Dec 10, 2001. The Draft Human Genome. What Data is Available?. NCBI assembled annotated genomic contigs Genome project data Other primary data Reference sequences - mRNA, proteins, transcripts

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Canadian Bioinformatics Workshops

Canadian Bioinformatics Workshops. www.bioinformatics.ca. Module #: Title of Module. 2. Module 2 Marker Gene Based Analysis. William Hsiao Analysis of Metagenomic Data June 24-26, 2015. Universal phylogenetic tree based on SSU rRNA sequences - N. Pace, Science, 1997.

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Computational Structural Biology

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The National Center for Biotechnology Information (NCBI) a primary resource for molecular biology information

Database Resources . The National Center for Biotechnology Information (NCBI) a primary resource for molecular biology information. www.ncbi.nih.gov. NCBI Mission.

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RNA- seq Analysis

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Aligning Multiple Genome Sequences With the Threaded Blockset Aligner

Aligning Multiple Genome Sequences With the Threaded Blockset Aligner. Blanchette, W., Kent, W.J., Riemer, C., Elnitski, L., Smit, A.F.A., Roskin, K.M., Baertsch, R., Rosenbloom, K., Clawson, H., Green, E.D., Haussler, D., and Miller, W. Genome Research 2004. Outline. Introduction TBA MULTIZ

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Next Generation Sequencing: comparison of the technologies for genome sequencing

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Workshop Schedule

Workshop Schedule. http://oomycete-training.org/2014-2 / Schedule has links to introductory presentations and the FungiDB workshops. FungiDB Exercises. http://fungidb.org FungiDB is a genome database with integrated bioinformatics tools; similar to FlyBase , TAIR, PlantGDB

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EFFICIENT ALGORITHM FOR COPY NUMBER VARIATION RECONSTRUCTION

EFFICIENT ALGORITHM FOR COPY NUMBER VARIATION RECONSTRUCTION. CS224 Project Dan He. CNV (COPY NUMBER VARIATION). One type of SV (Structural Variation). Reference. Donner. RE-SEQUENCING USING SHORT READS. Donner. COVERAGE RATIO.

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Chapter 16: Biotechnology

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GeVab : Genome Variation Analysis Browsing Server

InCoB2009 KRIBB. GeVab : Genome Variation Analysis Browsing Server. Korean BioInformation Center, KRIBB. http://gevab.org. GeVab. Motivation

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Collection of user requirements

Collection of user requirements. By: BINF 4360. User Interface. Point and click over text-based commands Warm colors Ability to switch on and off displayed information Combination of menus and toolbars Deep menu options (lots of submenus). User Roles.

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Assembly S.O.P.

Overlap Layout Consensus. Assembly S.O.P. Reference Assembly. Align reads to a reference sequence ??? PROFIT!!!!!. Reference Assembly by Newbler. from The Genome Sequencer Data Analysis Software Manual, p.147

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PMSB Project: RNA- Seq Read Simulation

PMSB Project: RNA- Seq Read Simulation. Overview. The actual process of RNA- Seq is quite involved For simple simulation , we can break it down to two steps : Simulate splicing of genes in the organism Simulate sampling process by the sequencing machine . Part A: Simulate Splicing.

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Abstract

Visualization of Sequence Alignment for Large Genomes. ??? ? : ??? ??? : ???. Method : Records mapping position. Abstract.

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