'Protein structure prediction methods' presentation slideshows

Structural Analysis "Big Science at Small Colleges" Curriculum Development Workshop

562 views • 56 slides

aims

aims. Structure prediction tries to build models of 3D structures of proteins that could be useful for understanding structure-function relationships. Possible scenarios. 1. No homology 1D predictions. Sequence motifs. Limited functional prediction. Ab-initio prediction

675 views • 54 slides

Protein Structure, classification, Prediction and Proteomics

Protein Structure, classification, Prediction and Proteomics. Protein Structure. Obtaining 3-D structure. Obtaining 3-D structure (NMR). Obtaining 3-D structure (Bioinformatics). 3-D structure (dynamics / computation). Subdomain Rearrangement in HIV-1 Reverse Transcriptase.

516 views • 45 slides

B cell epitopes and predictions

B cell epitopes and predictions. Pernille Haste Andersen, Ph.d. student Immunological Bioinformatics CBS, DTU. Outline. What is a B-cell epitope? How can you predict B-cell epitopes? B-cell epitopes in rational vaccine design.

634 views • 41 slides

Protein Structure Analysis - II

PLPTH 890 Introduction to Genomic Bioinformatics Lecture 23. Protein Structure Analysis - II. Liangjiang (LJ) Wang ljwang@ksu.edu April 10, 2005. Outline. Protein structure alignment (DALI and VAST). Protein secondary structure prediction (PHDsec, PSIPRED, etc).

592 views • 29 slides

Protein Structure Analysis - II

PLPTH 890 Introduction to Genomic Bioinformatics Lecture 23. Protein Structure Analysis - II. Liangjiang (LJ) Wang ljwang@ksu.edu April 10, 2005. Outline. Protein structure alignment (DALI and VAST). Protein secondary structure prediction (PHDsec, PSIPRED, etc).

358 views • 29 slides

Protein Secondary Structure Prediction

Protein Secondary Structure Prediction. ?. ?. TDVEAAVNSLVNLYLQASYLS. ?. Protein secondary structure prediction. Input: protein sequence Output: for each residue its associated Secondary structure (SS): alpha-helix, beta-strand, or loop. Servers for SS prediction.

1.23k views • 20 slides

Protein Secondary Structure Prediction

Protein Secondary Structure Prediction. ?. ?. TDVEAAVNSLVNLYLQASYLS. ?. Protein secondary structure prediction. Input: protein sequence Output: for each residue its associated Secondary structure (SS): alpha-helix, beta-strand, or loop. Servers for SS prediction.

245 views • 20 slides