'Protein family databases' presentation slideshows

out

875 views • 75 slides

Homology

Outline. Homology. Function annotation transfer. Domains. Protein-family Databases. Profile-HMMs. Pfam database. How to build a new ( Pfam ) protein family. EMBO Workshop, Cape Town, 2014. H omology. EMBO Workshop, Cape Town, 2014. Definition:

722 views • 59 slides

Other biological databases and ontologies

Other biological databases and ontologies. Biological systems. Sequence data. Protein folding and 3D structure. Taxonomic data Literature. Pathways and networks. Protein families and domains. Small molecules. Whole genome data. Ontologies -GO. Biological systems. Ontologies.

577 views • 43 slides

We have alredy discussed

Lec 09. We have alredy discussed. What is MSA (Multiple Sequence Alignment) ? What is it good for? How do I use it? Software and algorithms The programs How they work? Which to use? In practice Get the sequences Reformat them Evaluate the alignment Realign or modify the alignment

318 views • 21 slides