'Protein complexes' presentation slideshows

Regression, correlation and liquid association in complex genomic data analysis

1.36k views • 119 slides

Basic Bioinformatics and Gene Effects on Growth Rate in Bacteria

Basic Bioinformatics and Gene Effects on Growth Rate in Bacteria. Dr. Md. Aminul Hoque Date: 24-03-2012 E-mail: mdaminulh@gmail.com. Outlines. Bioinformatics Definition Short History of Bioinformatics Branch of Bioinformatics Bioinformatics in Research World Our Position and Level

1.42k views • 99 slides

PPI Network Alignment

PPI Network Alignment. ?????????????? ???????????. Protein-protein Interaction Network Alignment. Protein Biosynthesis. From DNA to life. Biology Technology. How do we measure protein interaction? Two-hybrid screens Co-immunoprecipitation. Two-hybrid screens. UAS. Reporter gene (LacZ).

1.09k views • 84 slides

Family based approaches

Protein Annotations from Sequence Data. Methods which also exploit non-homology based information. Family based approaches. Network based analyses. Homology based inference of protein functions. ancestral protein. a. duplication. paralogues. a. b. speciation. orthologues. a. a.

721 views • 56 slides

Chromatin Structure & Dynamics

Chromatin Structure & Dynamics. Victor Jin Department of Biomedical Informatics The Ohio State University. Chromatin. Walther Flemming first used the term Chromatin in 1882. At that time, Flemming assumed that within the nucleus there was some kind of a nuclear-scaffold .

869 views • 48 slides

V4 In silico studies to predict protein protein contacts

V4 In silico studies to predict protein protein contacts. Field of studying protein interactions is split into two areas: (1) on the macro level: map networks of protein interactions (2) on the micro level: understand mechanisms of interaction to predict interaction sites

623 views • 44 slides

V3 From Protein Complexes to Networks and back

V3 From Protein Complexes to Networks and back. Protein networks could be defined in a number of ways (1) Co-regulated expression of genes/proteins (2) Proteins participating in the same metabolic pathways (3) Proteins sharing substrates (4) Proteins that are co-localized

541 views • 43 slides

BICH 605

615 views • 37 slides

Protein Networks / Protein Complexes

Protein Networks / Protein Complexes. Protein networks could be defined in a number of ways (1) Co-regulated expression of genes/proteins (2) Proteins participating in the same metabolic pathways (3) Proteins sharing substrates (4) Proteins that are co-localized

524 views • 35 slides

Bioinformaticians + Experimentalists = Successful Protein Analysis

Bioinformaticians + Experimentalists = Successful Protein Analysis. Katarzyna Poleszak. International Institute of Molecular and Cell Biology Laboratory of Bioinformatics and Protein Engineering. Research subjects. Enzymes acting on:. DNA. RNA. Discovering novel enzymes

445 views • 35 slides

Protein Complexes in S. cerevisiae and E. coli A Focus on Transcription

Protein Complexes in S. cerevisiae and E. coli A Focus on Transcription. NIH April 7, 2003. Tandem Affinity Purification (TAP) Tagging Strategy for S. cerevisiae. Primer 1. Primer 1. 1. ATG. TAA. Targeted Gene. Targeted Gene. Primer 2. Primer 2. 2. Primer 1. Primer 1. Marker.

522 views • 34 slides

From High Throughput Pull-Downs To Protein Complexes: Building a Model of the Physical

From High Throughput Pull-Downs To Protein Complexes: Building a Model of the Physical Interactome of Yeast. Shoshana Wodak Hospital for Sick Children Shoshana@sickkids.ca Depts. Biochemistry & Medical Genetics and Microbiology University of Toronto. Swiss-Prot Fortaleza 2006. B.

372 views • 26 slides

An Exploratory Method to Reconstruct Pathways

Cory Tobin. An Exploratory Method to Reconstruct Pathways. Collaborators. Dr. Matteo Pellegrini Shawn Cokus @ UCLA. Outline. Purpose Methods Sample Data Possible Uses Final Remarks. Purpose.

301 views • 22 slides

MS of Intact Complexes and Hybrid Technologies

MS of Intact Complexes and Hybrid Technologies. Elise Cai Bi/Ch132 11-27-12. Protein Complexes. Subunit composition, stoichiometry Protein-protein interactions Architectural organization Dynamic changes. Native MS. MS of whole protein assemblies Examine large, heterogeneous complexes

264 views • 17 slides

Electron Transport Chain

Electron Transport Chain. Review. Glycolysis & the Krebs Cycle only produce 4 ATP/glucose Most of the energy from glucose is stored in NADH or FADH 2. Location. The Electron Transport Chain (ETC) takes place along the Inner Mitochondrial Membrane. Components.

1.24k views • 17 slides

Modularity and Community Structure in Networks*

Modularity and Community Structure in Networks*. Final project *Based on a paper by M.E.J Newman in PNAS 2006. Introduction. Networks. A network: presented by a graph G(V,E): V = nodes, E = edges (link node pairs) Examples of real-life networks: social networks (V = people)

336 views • 13 slides

210 views • 12 slides

ELECTRON TRANSPORT CHAIN

ELECTRON TRANSPORT CHAIN. NADH and FADH 2 , transfer their electrons to a series of compounds (mostly proteins), which are associated with the inner mitochondrial membrane .

312 views • 7 slides

AT Hook Motif

AT Hook Motif. What is it?.

138 views • 3 slides

Characterization of novel membrane complexes in Escherichia coli

False positives. False negatives. Characterization of novel membrane complexes in Escherichia coli Anna Albiniak 1 , Cristina F.R.O.Matos 1 , Colin Robinson 1 , Daniel O. Daley 2 Department of Biological Sciences, University of Warwick, Coventry, CV4 7AL, UK 1

94 views • 1 slides