'Probe sets' presentation slideshows

T-statistics is widespread in assessing differential expression.

T-statistics is widespread in assessing differential expression. Unstable variance estimates that arise when sample size is small can be corrected using: Error fudge factors (SAM) Bayesian methods (Limma). Limma. Linear model analysis of microarrays. {.

1.84k views • 166 slides

Models and methods for summarizing GeneChip probe set data

812 views • 71 slides

Meiotic recombination mapping with tiling microarrays: genotype and rate inference

Meiotic recombination mapping with tiling microarrays: genotype and rate inference. Richard Bourgon 22 November 2007 bourgon@ebi.ac.uk. Overview. Meiotic recombination Genotyping with tiling microarrays Previous single-probe approaches Multivariate approaches Post-processing

905 views • 67 slides

High-resolution mapping of meiotic crossovers and noncrossovers

High-resolution mapping of meiotic crossovers and noncrossovers. Wolfgang Huber EMBL-EBI. Meiotic recombination. Proper chromosome segregation. Increase of genetic diversity. Gene A. Gene B. Gene C. Gene A. Gene b. Gene c. Gene a. Gene b. Gene c. Gene a. Gene B. Gene C.

779 views • 46 slides

Fine Mapping of Complex Traits in Yeast: Mapping Meiotic Recombination across the Genome

Fine Mapping of Complex Traits in Yeast: Mapping Meiotic Recombination across the Genome. Wolfgang Huber EMBL - EBI. Proper chromosome segregation. Increase of genetic diversity. Gene A. Gene B. Gene C. Gene A. Gene b. Gene c. Gene a. Gene b. Gene c. Gene a. Gene B. Gene C.

760 views • 46 slides

A Large Scale Genetic analysis of c-Myc-regulated Gene Expression Patterns

A Large Scale Genetic analysis of c-Myc-regulated Gene Expression Patterns. Gene Expression Network Dynamics. by Tomer Galon. A Large Scale Genetic Analysis of c-Myc-regulated Gene Expression Patterns

526 views • 44 slides

Challenges of data management and analysis from 2nd generation sequencing platforms

Challenges of data management and analysis from 2nd generation sequencing platforms October 10 2006. Challenges of data management and analysis from 2nd generation sequencing platforms October 10 2006. Presenters. Colin Hercus 25 mer mapping. Zayed Albertyn 100 mer & polony mapping.

622 views • 44 slides

Richard Bourgon 20 February 2007 bourgon@ebi.ac.uk

Fine mapping of recombination in S. cerevisiae : high-density tiling arrays and semi-supervised clustering. Richard Bourgon 20 February 2007 bourgon@ebi.ac.uk. Meiotic recombination. Meiosis A diploid parent divides twice, yielding 4 haploid daughter cells.

606 views • 40 slides

How to integrate the diverse environmental signals

Different Plant Hormones Regulate Similar Processes through Largely Nonoverlapping Transcriptional Responses.

447 views • 36 slides

StemBase

StemBase. Stem Cell Network Microarray Course, Unit 6 June 2007. Sections. Introduction to StemBase Using StemBase Introduction to Biomarker server Using the Biomarker server. Introduction to StemBase. http://www.stembase.ca. The Stem Cell Genomics Project.

307 views • 19 slides

Transcript Profiling of RAW, J774, AtT, and B Cell

Transcript Profiling of RAW, J774, AtT, and B Cell. DNA microarray Affymetrix GeneChip MOE 430 A & B set provides comprehensive coverage of the transcribed mouse genome Comprised of 45,265 probe sets

276 views • 15 slides

Ontology Annotation Tree browser tool (OAT)

198 views • 12 slides

Ontology Annotation Treebrowser tool (OAT)

251 views • 12 slides

Microarray Data Analysis Using R

Microarray Data Analysis Using R. Studies in Tissue Databases Mark Reimers, NCI. Outline. The GNF tissue database Exploratory analysis - clustering Positional co-regulation Insight via co-regulation Apoptotic configuration of tissues Probe level analysis. The GNF Expression Atlas.

230 views • 11 slides

Brain

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brain

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PTTG1

Introduction and Objectives. Results of array analyses early vs. late Mets early Mets: PFS = 0 - 9 months, median = 1 month, n = 5 late Mets: PFS = 60-156 months, median = 92.5 months, n = 6 306 differentially expressed genes (414 probe sets; Fig.1), 27 ? & 279? in early Mets

262 views • 1 slides

Match against more than 2 cDNA

Figure S1. Affymetrix probe set distribution according to specificity for soybean predicted cDNA and gDNA sequences. The numbers of genes quantifiable by the probe sets are indicated in parentheses. 48 probes against soybean rRNA. Probe sets matching against soybean gDNA

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OAT - The Ontology Annotation Tree browser tool

(a). (b). treesetup.cgi. OATdb. (c). (d). treebrowser.cgi. QSdb. (e). (f). (g). (h). report.cgi. (j). (i). annotationReport.cgi. (k). geneReport.cgi. OAT - The Ontology Annotation Tree browser tool. Motivation for OAT. 1. Submit probe sets. Technical Components.

100 views • 1 slides

The Role and Mechanism of PPAR ? in the Transcriptional Regulation of its Target Genes

The Role and Mechanism of PPAR ? in the Transcriptional Regulation of its Target Genes. Jinlu Cai 1 , Henry L. Keen 2 ,Thomas L. Casavant 3,4,5 , and Curt D. Sigmund 2

107 views • 1 slides