'Probe set' presentation slideshows

Meiotic recombination mapping with tiling microarrays: genotype and rate inference

Meiotic recombination mapping with tiling microarrays: genotype and rate inference. Richard Bourgon 22 November 2007 bourgon@ebi.ac.uk. Overview. Meiotic recombination Genotyping with tiling microarrays Previous single-probe approaches Multivariate approaches Post-processing

905 views • 67 slides

High-resolution mapping of meiotic crossovers and noncrossovers

High-resolution mapping of meiotic crossovers and noncrossovers. Wolfgang Huber EMBL-EBI. Statistical and computational technology for the understanding of genotype - phenotype networks HT screening - RNAi, drugs, combinations Automated phenotyping from image analysis

793 views • 62 slides

Microarray Data Analysis

Microarray Data Analysis. The Bioinformatics side of the bench. The anatomy of your data files from Affymetrix array analysis. .DAT= image file (10 7 pixels) .CEL= measured cell intensities .CDF= cell descriptions files (identify probe sets and probe set pairs)

685 views • 55 slides

Fine Mapping of Complex Traits in Yeast: Mapping Meiotic Recombination across the Genome

Fine Mapping of Complex Traits in Yeast: Mapping Meiotic Recombination across the Genome. Wolfgang Huber EMBL - EBI. Proper chromosome segregation. Increase of genetic diversity. Gene A. Gene B. Gene C. Gene A. Gene b. Gene c. Gene a. Gene b. Gene c. Gene a. Gene B. Gene C.

775 views • 51 slides

High-resolution mapping of meiotic crossovers and noncrossovers

High-resolution mapping of meiotic crossovers and noncrossovers. Wolfgang Huber EMBL-EBI. Meiotic recombination. Proper chromosome segregation. Increase of genetic diversity. Gene A. Gene B. Gene C. Gene A. Gene b. Gene c. Gene a. Gene b. Gene c. Gene a. Gene B. Gene C.

779 views • 46 slides

Richard Bourgon 20 February 2007 bourgon@ebi.ac.uk

Fine mapping of recombination in S. cerevisiae : high-density tiling arrays and semi-supervised clustering. Richard Bourgon 20 February 2007 bourgon@ebi.ac.uk. Meiotic recombination. Meiosis A diploid parent divides twice, yielding 4 haploid daughter cells.

606 views • 40 slides

Applications of microarrays

541 views • 37 slides

How to integrate the diverse environmental signals

Different Plant Hormones Regulate Similar Processes through Largely Nonoverlapping Transcriptional Responses.

447 views • 36 slides

Fine mapping of recombination in S. cerevisiae

508 views • 33 slides

Dr Andrew Harrison Departments of Mathematical Sciences and Biological Sciences

Looking for signals in tens of thousands of GeneChips. Dr Andrew Harrison Departments of Mathematical Sciences and Biological Sciences University of Essex harry@essex.ac.uk.

434 views • 28 slides

Genetics of gene expression in barley

Genetics of gene expression in barley. Birmingham University: Elena Potokina Zewei Luo Mike J Kearsey. SCRI (Dundee) : Arnis Druka Robbie Waugh. Material : Steptoe x Morex doubled haploid (DH) recombinant inbred lines Tool : 22,801 unigene Affymetrix Barley Chip.

417 views • 27 slides

1. Principles and important terminology 2. RNA Preparation and quality controls 3. Data handling

Introduction Into The Gene Expression Platform of the IVM. 1. Principles and important terminology 2. RNA Preparation and quality controls 3. Data handling 4. Costs 5. Protocols 6. Information for collaboration partners 7. Downloads. 1. Principles and Terminology.

411 views • 25 slides

High-resolution mapping of meiotic crossovers and noncrossovers

High-resolution mapping of meiotic crossovers and noncrossovers. Wolfgang Huber EMBL-EBI. Meiotic recombination. Proper chromosome segregation. Increase of genetic diversity. Gene A. Gene B. Gene C. Gene A. Gene b. Gene c. Gene a. Gene b. Gene c. Gene a. Gene B. Gene C.

522 views • 24 slides

Microarray Data Analysis

Microarray Data Analysis. Data quality assessment and normalization for affymetrix chips. Outline. Visualization and diagnostic plots Normalization. Microarray studies life cycle. Here we are. Looking at microarray data Diagnostic Plots. Was the experiment a success?.

431 views • 19 slides

Felix Naef & Marcelo Magnasco, GL meeting, Nov. 19 2001 felix@funes.rockefeller Outline

Felix Naef & Marcelo Magnasco, GL meeting, Nov. 19 2001 felix@funes.rockefeller.edu Outline. Excursions into GeneChip data analysis. Background subtraction Probeset statistics. Background estimation. estimate both mean B and fluctuations s needed in low-intensity regime

254 views • 15 slides

Transcript Profiling of RAW, J774, AtT, and B Cell

Transcript Profiling of RAW, J774, AtT, and B Cell. DNA microarray Affymetrix GeneChip MOE 430 A & B set provides comprehensive coverage of the transcribed mouse genome Comprised of 45,265 probe sets

276 views • 15 slides

Brain

194 views • 4 slides

Number of transcripts

Padmalatha et al., Supplementary Figure 3. Down-regulated. Up-regulated. Number of transcripts.

94 views • 1 slides

OAT - The Ontology Annotation Tree browser tool

(a). (b). treesetup.cgi. OATdb. (c). (d). treebrowser.cgi. QSdb. (e). (f). (g). (h). report.cgi. (j). (i). annotationReport.cgi. (k). geneReport.cgi. OAT - The Ontology Annotation Tree browser tool. Motivation for OAT. 1. Submit probe sets. Technical Components.

100 views • 1 slides

Abstract

89 views • 1 slides