'Probable path' presentation slideshows

CS5263 Bioinformatics

CS5263 Bioinformatics. Lecture 11: Markov Chain and Hidden Markov Models. In the next few lectures. Hidden Markov Models The theory Probabilistic treatment of sequence alignments using HMMs Application of HMMs to biological sequence modeling and discovery of features such as genes.

753 views • 61 slides

CS5263 Bioinformatics

CS5263 Bioinformatics. Lecture 11: Markov Chain and Hidden Markov Models. In the next few lectures. Hidden Markov Models The theory Probabilistic treatment of sequence alignments using HMMs Application of HMMs to biological sequence modeling and discovery of features such as genes.

619 views • 61 slides

Hidden Markov Models

Hidden Markov Models. BMI/CS 576 www.biostat.wisc.edu/bmi576.html Colin Dewey cdewey@biostat.wisc.edu Fall 2010. Classifying sequences. Markov chains useful for modeling a single class of sequence likelihood ratios of different models can be used to classify sequences

670 views • 56 slides

Profile Searches

Profile Searches. Revised 07/11/06. Overview. Introduction Motif representation Motif screening Motif Databases Exercise. Introduction. Multiple sequence alignment. Features characteristic for the whole family. How to represent the characteristic features?.

672 views • 56 slides

Profile Searches

Profile Searches. Revised 07/11/06. Overview. Introduction Motif representation Motif screening Motif Databases Exercise. Introduction. Multiple sequence alignment. Features characteristic for the whole family. How to represent the characteristic features?.

702 views • 56 slides

Hidden Markov Models

Hidden Markov Models. BMI/CS 576 www.biostat.wisc.edu/bmi576.html Colin Dewey cdewey@biostat.wisc.edu Fall 2010. Classifying sequences. Markov chains useful for modeling a single class of sequence likelihood ratios of different models can be used to classify sequences

569 views • 56 slides

Question

Question. Answer. Pairwise alignment using HMMs. Wouter van Gool and Thomas Jellema. Pairwise alignment using HMMs. Contents Most probable path Thomas Probability of an alignment Thomas Sub-optimal alignments Thomas Pause

664 views • 51 slides

Hidden Markov Model Lecture #6

Hidden Markov Model Lecture #6. Background Readings : Chapters 3.1, 3.2 in the text book, Biological Sequence Analysis , Durbin et al., 2001. Use of Markov Chains in Genome search: Modeling CpG Islands.

372 views • 35 slides

Hidden Markov Model Lecture #6

445 views • 30 slides

Dishonest Casino

85 views • 8 slides