'Obo foundry' presentation slideshows

Image Ontology

1.94k views • 165 slides

Image Ontology

Image Ontology. Barry Smith. What this meeting is about. to promote interoperability of image and imaging ontologies in the biomedical domain through the application of principles of sound ontology construction through the coordination of current ontology development efforts

1.8k views • 161 slides

Ontology in Buffalo August 27, 2012

Ontology in Buffalo August 27, 2012. Barry Smith. Problems. How to find data How to reason with data when you find it How to integrate with other data How to label the data you are collecting Answer annotate your data with a common ontology

1.48k views • 133 slides

switch on Webex

1.32k views • 115 slides

How to Build an Ontology

How to Build an Ontology. Barry Smith http://ontology.buffalo.edu/smith. Everywhere databases are being created. too often in such a way that the data is siloed leading to massive expense in integrating data in ad hoc ways

1.07k views • 95 slides

The Ontology of Paleobiology

1.1k views • 91 slides

Towards Common Upper Ontology Barry Smith ontology.buffalo/smith September 25, 2009

Towards Common Upper Ontology Barry Smith http://ontology.buffalo.edu/smith September 25, 2009. Overview. The Rise of Applied Ontology The OBO Foundry Basic Formal Ontology How to Build an Ontology What is a Disease?. Overview. The Rise of Applied Ontology The OBO Foundry

1.05k views • 89 slides

The OBO Foundry

Standards and Ontology. The OBO Foundry. Barry Smith Center of Excellence in Bioinformatics & Life Sciences, University at Buffalo IFOMIS, Saarland University http://ontology.buffalo.edu/smith. we are accumulating huge amounts of sequence data, image data, pharma data,.

760 views • 61 slides

Pax Terminologica

Pax Terminologica. Barry Smith Institute for Formal Ontology and Medical Information Science (IFOMIS), Saarland University / University at Buffalo. Overview. systems for semantic annotation linguistics vs. science semantic annotation in biomedical informatics

657 views • 58 slides

The Evaluation of Ontologies Editorial Review vs. Democratic Ranking

The Evaluation of Ontologies Editorial Review vs. Democratic Ranking. Barry Smith. The need for ontology evaluation. Ontologies are expensive. $8 million have been invested in the Gene Ontology thus far Has this investment been worthwhile? Are some ontologies more useful than others?

622 views • 50 slides

Stefan Schulz

Stefan Schulz. Institute for Medical Informatics, Statistics and Documentation,. Modularity Issues in Biomedical Ontologies. Structure of Presentation. Overview of large ontology projects in the biomedical domain Modularization issues Study on purpose-driven modularization of SNOMED CT.

698 views • 50 slides

Why a Credit Card Number is Not a Number

Why a Credit Card Number is Not a Number. Barry Smith http://ontology.buffalo.edu/smith. Why Lite Ontologies will Not Even Work for Cataloging Your Collection of Favorite Rock Bands. Barry Smith http://ontology.buffalo.edu/smith.

634 views • 43 slides

Biomedical Ontologies

Biomedical Ontologies. Bio-Trac 40 (Protein Bioinformatics) October 9, 2008 Zhang-Zhi Hu, M.D. Research Associate Professor Protein Information Resource, Department of Biochemistry and Molecular & Cellular Biology Georgetown University Medical Center. Overview. What is ontology ?

682 views • 43 slides

Does Medical Image Simulation Require Formal Ontologies?

546 views • 41 slides

Workshop

Workshop. 7.00 Welcoming Remarks 7.15 Barry Smith (Buffalo, NY) 7.40 Lindsay Cowell (Duke University, NC) 8.05 Nigam Shah (Stanford University, CA) 8.30 Break 8.40 Dave Parrish (Immune Tolerance Network, PA) 9.05 Yannick Legre (Healthgrid, France).

541 views • 41 slides

516 views • 40 slides

Community Ontology Development

Community Ontology Development. Lessons from the Gene Ontology. Ontology:. Sets of classes (terms) with relationships between them that describe a given domain. Annotation. Associating some object (e.g. protein, gene, experiment) with ontology terms with some evidence.

541 views • 31 slides

Ontology of Disease and the OBO Foundry

Ontology of Disease and the OBO Foundry. Chris Mungall NCBO GO Nov 2006. Outline. OBO Foundry introduction Organisational principles Phenotypes in OBO Ontology of Disease (and disease-related entities) in the OBO Foundry What needs to be done?. OBO Foundry goals.

461 views • 28 slides

OBO-Foundry

OBO-Foundry. OBO was conceived and announced in in 2001. 10 october 2001 Michael Ashburner and Suzanna Lewis with acknowledgements of others in the GO community. open biology ontologies - obo.org

419 views • 25 slides

Richard H. Scheuermann U.T. Southwestern Medical Center

Ontology for Clinical Investigations (OCI): Representation of clinical research data in the framework of a formal biomedical investigation ontology. Richard H. Scheuermann U.T. Southwestern Medical Center. Outline. Motivation - CTSA Ontologies and OBO Foundry

399 views • 23 slides