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Divining Systems Biology Knowledge from High-throughput Experiments Using EGAN

Divining Systems Biology Knowledge from High-throughput Experiments Using EGAN. Jesse Paquette ISMB 2010 Biostatistics and Computational Biology Core Helen Diller Family Comprehensive Cancer Center University of California, San Francisco (AKA BCBC HDFCCC UCSF). High-throughput experiments.

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673 views • 58 slides

Gene Set Enrichment Analysis (GSEA)

Gene Set Enrichment Analysis (GSEA). Gene Set Enrichment. Example: human diabetes. Skeletal muscle biopsies . No single gene was found to be significantly regulated

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333 views • 11 slides

Gene Set Enrichment Analysis (GSEA)

Gene Set Enrichment Analysis (GSEA). Gene Set Enrichment. Example: human diabetes. Skeletal muscle biopsies . No single gene was found to be significantly regulated

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1.07k views • 11 slides

Table S1. GSEA of canonical pathway gene sets (CP) from MSigDB

Table S1. GSEA of canonical pathway gene sets (CP) from MSigDB. Enriched in QHii066-treated cells. Enriched in DMSO-treated cells. Table S2. GSEA of chemical and genetic perturbation signatures (CGP) from MSigDB. Enriched in QHii066-treated cells. Enriched in DMSO-treated cells.

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172 views • 2 slides

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Divining Systems Biology Knowledge from High-throughput Experiments Using EGAN

Gene Set Enrichment Analysis (GSEA)

Gene Set Enrichment Analysis (GSEA)

Table S1. GSEA of canonical pathway gene sets (CP) from MSigDB