'Match score 1' presentation slideshows

CSE 182-L2:Blast & variants I Dynamic Programming

CSE 182-L2:Blast & variants I Dynamic Programming. www.cse.ucsd.edu/classes/fa05/cse182. www.cse.ucsd.edu/~vbafna. Searching Sequence databases. http://www.ncbi.nlm.nih.gov/BLAST/. Query:. >gi|26339572|dbj|BAC33457.1| unnamed protein product [Mus musculus]

543 views • 42 slides

CSE182-L5: Scoring matrices Dictionary Matching

CSE182-L5: Scoring matrices Dictionary Matching. Silly Quiz. PAM 1 distance. Two sequences are 1 PAM apart if they differ in 1 % of the residues. 1% mismatch. PAM 1 (a,b) = Pr[residue a substitutes residue b, when the sequences are 1 PAM apart]. PAM 1. Generating Higher PAMs.

550 views • 32 slides

CSE182-L5: Scoring matrices Dictionary Matching

CSE182-L5: Scoring matrices Dictionary Matching. Silly Quiz. PAM 1 distance. Two sequences are 1 PAM apart if they differ in 1 % of the residues. 1% mismatch. PAM 1 (a,b) = Pr[residue a substitutes residue b, when the sequences are 1 PAM apart]. PAM 1. Generating Higher PAMs.

346 views • 32 slides

BIOINFORMATICS Sequences #2

307 views • 30 slides

Roadmap

Roadmap. The topics: basic concepts of molecular biology more on Perl overview of the field biological databases and database searching sequence alignments phylogenetics structure prediction microarray data analysis. Sequence alignments. Introduction What is an alignment?

347 views • 26 slides

Roadmap

Roadmap. The topics: basic concepts of molecular biology more on Perl overview of the field biological databases and database searching sequence alignments phylogenetics structure prediction microarray data analysis. Sequence alignments. Introduction What is an alignment?

385 views • 26 slides