'Low complexity regions' presentation slideshows

NGS Read Mapping

738 views • 70 slides

Sequence Database Searching

563 views • 32 slides

Sequence based searching

452 views • 32 slides

BLAST

BLAST. Finding Function By Sequence Similarity. Concepts of Sequence Similarity Searching. The premise: One sequence by itself is not informative; it must be analyzed by comparative methods against existing sequence databases to develop hypothesis concerning relatives and function. .

1.04k views • 27 slides

Domain-SLiM mining from High Throughput Protein Interaction Data

Domain-SLiM mining from High Throughput Protein Interaction Data. Hugo Willy August 19, 2010. Introduction to SLiM. It stands for (Protein) S hort Li near M otif By its name, it is a short linear stretch of region in a protein sequence that is recognized by another protein for binding

236 views • 23 slides

BINF6201/8201 Patterns in Protein Families 11-16-2009

BINF6201/8201 Patterns in Protein Families 11-16-2009. Problems for pairwise alignment for database searches.

389 views • 23 slides

Genome properties

Genome properties. Henrik Lantz - NBIS/ SciLife /Uppsala University. Organisms are different, and so are assembly projects. Genome properties. Genome size Heterozygosity levels Repeat-content GC-content Secondary structure Ploidy level. Genome size.

215 views • 21 slides