'Gov blast' presentation slideshows

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Li-San Wang Penn Center for Bioinformatics University of Pennsylvania lswang@maild.upenn

Introduction to NCBI (and Other Online Bioinformatics Resources) Society for Developmental Biology 2008. Li-San Wang Penn Center for Bioinformatics University of Pennsylvania lswang@mail.med.upenn.edu http://people.pcbi.upenn.edu/~lswang/. Outline.

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What is RefSeqGene?

What is RefSeqGene?. Introductions. Donna Maglott, Ph.D. Worked on NCBI RefSeq since 1998 Worked on NCBI Gene ( via LocusLink) and RefSeq since 1998 Worked on RefSeqGene since 2007 (thank you Dr. Gulley)

674 views • 38 slides

Bioinformatics for biomedicine Sequence search: BLAST, FASTA

Bioinformatics for biomedicine Sequence search: BLAST, FASTA. Lecture 2, 2006-09-26 Per Kraulis http://biomedicum.ut.ee/~kraulis. Previous lecture: Databases. General issues Data model Quality Policies Updates, corrections EMBL, GenBank, Ensembl UniProt Access: EBI, NCBI (Entrez).

411 views • 34 slides

Denovo genome assembly and analysis

Denovo genome assembly and analysis. outline. De novo genome assembly Gene finding from assembled contigs Gene annotation. Denovo genome assembly. Reads. Genome contig. Gene finding. To find out coding region on genome sequence. Genes on Genome. Genome. ?. Gene Annotation.

630 views • 33 slides

BLAST

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BLAST

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MICB 405 Bioinformatics Mini-Lab #2 - BLAST

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Lecture 4: Practical use of sequence alignment methods and introduction of projects

CZ5225 Methods in Computational Biology. Lecture 4: Practical use of sequence alignment methods and introduction of projects. Sequence Alignment Methods. Pairwise alignment ? best-matching Global alignment Local alignment Multiple alignment Software FASTA Clustal

332 views • 19 slides

Psi-Blast: Detecting structural homologs

144 views • 12 slides