'Genomic sequence' presentation slideshows

GENERAL VIEW OF THE HUMAN GENOME

GENERAL VIEW OF THE HUMAN GENOME. Gene landscape. In prokaryotes, genes are often tandemly arranged, with little or no spacer sequences in between In eukaryotes, there is considerable spacer DNA between genes

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Sourav Chatterji UC Davis Genome Center schatterji@ucdavis

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Gene Prediction: Similarity-Based Approaches

Gene Prediction: Similarity-Based Approaches. Outline. Introduction Exon Chaining Problem Spliced Alignment Gene Prediction Tools. Section 1: Introduction. Similarity-Based Approach to Gene Prediction. Some genomes may be well-studied, with many genes having been experimentally verified.

762 views • 53 slides

Web-based analysis and annotation tools

WIS Genome &Bioinformtics. Web-based analysis and annotation tools. Nili Avidan. The Crown Human Genome Center & The National Lab for Genomic Infrastructure Supported by the Ministry of Science. WIS Genome & Bioinformtics. WIS Genome &Bioinformtics.

641 views • 49 slides

Genome Rearrangements

Genome Rearrangements. (Lecture for CS498-CXZ Algorithms in Bioinformatics) Dec. 6, 2005 ChengXiang Zhai Department of Computer Science University of Illinois, Urbana-Champaign. Outline. The Problem of Genome Rearrangements Sorting By Reversals Greedy Algorithm for Sorting by Reversals

622 views • 47 slides

Genomes on Line Database The GOLD genomic standards

Genomes on Line Database The GOLD genomic standards. Submitting genomic and metagenomic projects in img/GOLD Ioanna Pagani Genomic Standards Group ipagani@lbl.gov. Introduction.

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Constructions and Applications of Alternative Splicing Databases

Constructions and Applications of Alternative Splicing Databases. ????. ????????. speaker: ???. Outline. Introduction Construction of alternative splicing database Survey of existing solutions Applications . Introduction. RNA Splicing. Alternative Splicing. Definitions

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Genome Related Biological Databases

Genome Related Biological Databases. Content. DNA Sequence databases Protein databases Gene prediction Accession numbers NCBI website Ensembl website. Nucleotide databases. The underlying raw DNA sequences are identical. DDBJ. EMBL. GenBank. Housed at EBI European

567 views • 35 slides

Sequence databases

Sequence databases. Daniel Svozil. Primary sequence databases. All published genome sequences are available over the internet requirement of every scientific journal Main resources (primary databases, big three): NCBI database (GenBank) ( www.ncbi.nlm.nih.gov )

585 views • 34 slides

Comparing the Complete S. cerevisiae and C. elegans Proteomes: Orthology and Divergence

Comparing the Complete S. cerevisiae and C. elegans Proteomes: Orthology and Divergence. Stephen A. Chervitz Saccharomces Genome Database NCBI Boston University. Goals of this study. Explore protein sequence and domain conservation between S. cerevisiae and C. elegans .

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Paola Bonizzoni Graziano Pesole * Raffaella Rizzi

A Method to Detect Gene Structure and Alternative Splice Sites by Agreeing ESTs to a Genomic Sequence. Paola Bonizzoni Graziano Pesole * Raffaella Rizzi DISCo, University of Milan-Bicocca, Italy * Department of Physiology and Biochemistry, University of Milan, Italy

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Today

Today. Elements of complex genomes Protein domains and exon shuffling Origin of novel genes Alternative splicing Transposable elements and genome size. Protein domains bind antigens in human immunoglobulin. Evolution and conservation of domains in diverse proteins.

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x Blast y pour tous

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Genome analysis and annotation

Genome analysis and annotation. Which sequences code for proteins and structural RNAs ? What is the function of the predicted gene products ? Can we link genotype to phenotype ? (i.e. What genes are turned on when ? Why do two strains of the same pathogen vary in their pathogenicity ?)

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Other User Interface Highlights

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Abstract

CHXE FINAL SEQ F TO CHXE FINAL SEQ R. CHXE-5'UTRendF TO CHXE-3'UTRendR. CHXE-5'UTRendF to LUT1-5'RACE. LUT1-5RACE TO CHXE-3'UTRendR. CHXE FINALSEQ F TO LUT1-5'RACE. LUT1-5RACE TO CHXE FINALSEQ R. CHXE-5'UTRendF TO CHXE-5'CDSendR. CHXE FINALSEQ F TO CHXE-5'CDSendR.

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P-STAT2

A. B. P117. WT. Genomic sequence. cDNA sequence (P117). IFN a 3 h 6h. IFN g 0 3 h 6h. IFN a 3 h 6h. IFN g 0 3 h 6h. P117. WT. Exon 4. Exon 5. P-STAT1. STAT1. P-STAT2. STAT2. P-STAT3. STAT3.

159 views • 1 slides