'Fasta file' presentation slideshows

What you need to simulate flexibility

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Parsing

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Parsing

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Part I: Tips and Techniques from curators

Part I: Tips and Techniques from curators. GBrowse at TAIR David Swarbreck. TAIR9 Genome Release. TAIR9 - Sources of data. New cDNA/EST data, x-species alignments Updates from proteome data Baerenfaller et al., 2008 and Castellana et al., 2008 Analysis of pseudopipe annotations

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Pyrosequencing for Metagenomics: accessing and organizing raw data

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Using Local Tools: BLAST

Using Local Tools: BLAST. BCHB524 2008 Lecture 11. Outline. Install and run blast from NCBI Download Format sequence databases Run by hand Running blast and interpreting results Directly and using BioPython Exercises Lecture 9 exercises. Local Tools.

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Subroutines and Files

Subroutines and Files. Bioinformatics Ellen Walker Hiram College. Why Subroutines?. Saves typing Saves potential copy/paste errors Collect common algorithm in one place for reuse. Built-In Subroutines. Provide common useful functions, e.g. Index Length Substr Call with arguments,

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A Minimum Information Standard for Reporting NGS Immunogenomic Genotyping Data

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Object-oriented Design and Programming

Object-oriented Design and Programming. Conrad Huang PC204, Fall 2004. Requirements. I have a bunch of mRNA sequences and I want to know where they are located on the mouse genome. I want a fast method because I plan to do this with lots of data sets.

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On line (DNA and amino acid) S equence Information

On line (DNA and amino acid) S equence Information . Lecture 9. Introduction. Basic bioinformatics Databases NCBI home page Query and return results DNA sequence results page Protein sequence results page . Bioinformatics Database.

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Lecture 8:

Lecture 8: . Basic concepts of subroutines. Functions . In perl functions take the following format: sub subname { my $var1 = $_[0]; statements Return value } After all the subs are defined they are then called as required: my $variable = subname ($name); The SubroutineExample.pl.

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Upload the XtAtoh7.maf file ( or another acceptable alignment format ) and click Next ...

For this demo you already need the XtAtoh7.maf multiple alignment file from demo (a). Another example.maf file is also available on the ConTra help page in the description of Step1. Upload the XtAtoh7.maf file ( or another acceptable alignment format ) and click Next.

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