'Boyer moore algorithm' presentation slideshows

CS 5263 Bioinformatics

CS 5263 Bioinformatics. Exact String Matching Algorithms. Overview. Sequence alignment: t wo sub-problems: How to score an alignment with errors How to find an alignment with the best score Today: exact string matching Does not allow any errors Efficiency becomes the sole consideration

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CS 6293 Advanced Topics: Current Bioinformatics

CS 6293 Advanced Topics: Current Bioinformatics. Lecture 5 Exact String Matching Algorithms. Overview. Sequence alignment: t wo sub-problems: How to score an alignment with errors How to find an alignment with the best score Today: exact string matching Does not allow any errors

1.04k views • 90 slides

Lecture 27. String Matching Algorithms

Lecture 27. String Matching Algorithms. Recap. Floyd algorithm help to find the shortest path between every pair of vertices of a graph. Floyd graph may contain negative edges but no negative cycles

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Exact String Matching Algorithms

730 views • 27 slides

Tuned Boyer Moore Algorithm

Tuned Boyer Moore Algorithm. Fast string searching , HUME A. and SUNDAY D.M., Software - Practice & Experience 21(11), 1991, pp. 1221-1248. Adviser: R. C. T. Lee Speaker: C. W. Cheng National Chi Nan University. Problem Definition.

762 views • 25 slides

A Fast String Matching Algorithm

A Fast String Matching Algorithm. The Boyer Moore Algorithm. The obvious search algorithm . Considers each character position of str and determines whether the successive patlen characters of str matches pat . In worst case, the number of comparisons is in the order of i*patlen .

527 views • 19 slides

Pattern Matching

Pattern Matching. A string is a sequence of characters Examples of strings: Python program HTML document DNA sequence Digitized image An alphabet S is the set of possible characters for a family of strings Example of alphabets: ASCII Unicode {0, 1} {A, C, G, T}.

193 views • 15 slides

Pattern Matching

Pattern Matching. A string is a sequence of characters Examples of strings: Java program HTML document DNA sequence Digitized image An alphabet S is the set of possible characters for a family of strings Example of alphabets: ASCII Unicode {0, 1} {A, C, G, T}.

135 views • 13 slides

The Longest Common Subsequence Problem

The Longest Common Subsequence Problem. CSE 373 Data Structures. Reading. Goodrich and Tamassia, 3 rd ed, Chapter 12, section 11.5, pp.570-574. Motivation. Two Problems and Methods for String Comparison: The substring problem The longest common subsequence problem .

136 views • 8 slides