'Base calling' presentation slideshows

Whole Genome Shotgun Assembly

Whole Genome Shotgun Assembly. Two strategies for sequencing: clone-by-clone approach whole-genome shotgun approach (Celera, Gene Myers). Shotgun sequencing was introduced by F. Sanger et al. (1977) and has remained the mainstay of genome sequence assembly for nearly 25 years now.

1.2k views • 45 slides

NGS: Coming to a Lab Near You! An Introduction to Next Generation Sequencing (NGS) SNUG 2013

376 views • 37 slides

Channel-Independent Viterbi Algorithm (CIVA) for DNA Sequencing

Channel-Independent Viterbi Algorithm (CIVA) for DNA Sequencing. Xiaohua (Edward) Li Department of Electrical and Computer Engineering State University of New York at Binghamton. Outline. Introduction CIVA Use CIVA for base-calling Simulations Conclusions. Introduction: DNA sequencing.

334 views • 19 slides

Affymetrix Microarray and Illumina/ Solexa NextGen Sequencing Yuannan Xia, Ph.D

Affymetrix Microarray and Illumina/ Solexa NextGen Sequencing Yuannan Xia, Ph.D Genomics Core Research Facility 10.27.2009. Affymetrix GeneChip Microarray System.

497 views • 19 slides

Lettuce/Sunflower EST CGPDB project. Data analysis, assembly visualization and validation.

Linear graphical representation of BLAST search of Arabidopsis genome against Lettuce/Sunflower EST assemblies. http://cgpdb.ucdavis.edu/database/est_vs_ath/tigr_vs_let_and_sun.html. Lettuce/Sunflower EST CGPDB project. Data analysis, assembly visualization and validation.

107 views • 1 slides

INTRODUCTION Expressed sequence tags offer a low cost approach to gene discovery

From ESTs to partial genomes. The Environmental Genomics Thematic Programme Data Centre. Alasdair Anthony, Ralf Schmid, James Wasmuth, John Parkinson and Mark Blaxter. Nematode Genomics, Institute of Cell, Animal and Population Biology, University of Edinburgh, EH9 3JT. INTRODUCTION

163 views • 1 slides