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Inferring Viral Quasispecies Spectra from NGS Reads

Inferring Viral Quasispecies Spectra from NGS Reads

Inferring Viral Quasispecies Spectra from NGS Reads. Ion M ? ndoiu Computer Science & Engineering Department University of Connecticut. Outline. Background Quasispecies spectrum reconstruction from shotgun NGS reads Quasispecies spectrum reconstruction from amplicon NGS reads

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846 views • 74 slides
SNP Discovery in Whole-Genome Light-Shotgun 454 Pyrosequences

SNP Discovery in Whole-Genome Light-Shotgun 454 Pyrosequences

SNP Discovery in Whole-Genome Light-Shotgun 454 Pyrosequences. Aaron Quinlan 1 , Andrew Clark 2 , Elaine Mardis 3 , Gabor Marth 1. (1) Department of Biology, Boston College (2) Departments of Molecular Biology and Genetics, Cornell University

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356 views • 22 slides
FuzzyPath Assemblies - from Bacterial to Mammalian Genomes and Zebrafish Finishing

FuzzyPath Assemblies - from Bacterial to Mammalian Genomes and Zebrafish Finishing

FuzzyPath Assemblies - from Bacterial to Mammalian Genomes and Zebrafish Finishing. Zemin Ning The Wellcome Trust Sanger Institute. Selexa reads assembler to extend long reads of 1-2Kb. forward-reverse paired reads. known dist. ~500 bp. 30-70 bp. 30-70 bp. Capillary reads assembler

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313 views • 20 slides
FuzzyPath Assemblies - from Mixed Solexa /454 Datasets to Extremely GC Biased Genomes

FuzzyPath Assemblies - from Mixed Solexa /454 Datasets to Extremely GC Biased Genomes

FuzzyPath Assemblies - from Mixed Solexa /454 Datasets to Extremely GC Biased Genomes. Zemin Ning The Wellcome Trust Sanger Institute. Selexa reads assembler to extend long reads of 1-2Kb. forward-reverse paired reads. known dist. ~500 bp. 30-70 bp. 30-70 bp. Capillary reads assembler

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316 views • 19 slides

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