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BIOINFORMATICS Sequences #2

BIOINFORMATICS Sequences #2. Mark Gerstein, Yale University GersteinLab.org/courses/452 (last edit in fall '05). Basic Alignment via Dynamic Programming Suboptimal Alignment Gap Penalties Similarity (PAM) Matrices Multiple Alignment Profiles, Motifs, HMMs Local Alignment

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792 views • 67 slides

Lecture 10 Secondary Structure Prediction

Lecture 10 Secondary Structure Prediction. Bioinformatics Center IBIVU. Protein primary structure. 20 amino acid types A generic residue Peptide bond. SARS Protein From Staphylococcus Aureus. 1 MKYNNHDKIR DFIIIEAYMF RFKKKVKPEV 31 DMTIKEFILL TYLFHQQENT LPFKKIVSDL

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474 views • 29 slides

Secondary Structure Prediction

Secondary Structure Prediction. Victor A. Simossis Bioinformatics Center IBIVU. Protein primary structure. 20 amino acid types A generic residue Peptide bond. SARS Protein From Staphylococcus Aureus. 1 MKYNNHDKIR DFIIIEAYMF RFKKKVKPEV 31 DMTIKEFILL TYLFHQQENT LPFKKIVSDL

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408 views • 23 slides

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17 residue window - PowerPoint PPT Presentation

BIOINFORMATICS Sequences #2

Lecture 10 Secondary Structure Prediction

Secondary Structure Prediction