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Natural Variation in Arabidopsis Light Response: Linkage Disequilibrium Mapping Justin Borevitz Salk Institute http://naturalvariation.org. Talk Outline. Survey of light response in Arabidopsis accessions QTL mapping of light response in Ler/Cvi RILs Association mapping of LIGHT QTL.

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slide1

Natural Variation in ArabidopsisLight Response:Linkage Disequilibrium MappingJustin BorevitzSalk Institutehttp://naturalvariation.org

slide2

Talk Outline

  • Survey of light response in Arabidopsis accessions
  • QTL mapping of light response in Ler/Cvi RILs
  • Association mapping of LIGHT QTL
linkage disequilibrium mapping
Linkage Disequilibrium Mapping
  • What is the extent of LD in Arabidopsis? locus and genome wide
  • Can this be used to fine map QTL?
  • Genome wide association scans?
slide18

LD mapping at LIGHT1

LD mapping at LIGHT1

SNP108

SNP108

Test statistic

Chromosome 1 (7.1Mb – 7.5Mb)

Chromosome 1 (6.5Mb – 8Mb)

White light

slide19

LD mapping at LIGHT1

SNP108

SNP108

Test statistic

Chromosome 1 (7.1Mb – 7.5Mb)

Chromosome 1 (6.5Mb – 8Mb)

Red light

ld mapping at light2 phyb
LD mapping at LIGHT2 (PHYB)

Test statistic

PHYB

Chromosome 2 (8Mb – 8.25Mb)

slide21

NaturalVariation.org

  • Salk
    • Joanne Chory
    • Detlef Weigel
    • Joseph Ecker
  • UC Davis
    • Julin Maloof
  • UC San Diego
    • Charles Berry
  • USC
    • Magnus Nordborg
  • Stanford
    • Tina Noyes
    • Sujatha Krishnakumar
    • Peter Oefner
  • Salk
    • Joanne Chory
    • Detlef Weigel
    • Joseph Ecker
  • UC Davis
    • Julin Maloof
  • UC San Diego
    • Charles Berry
  • USC
    • Magnus Nordborg
  • Stanford
    • Tina Noyes
    • Sujatha Krishnakumar
    • Peter Oefner
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