Trace recalling on MGC traces. Dec 21 2005. Why?. There are almost certainly alternately spliced targets in the MGC set that we would like to find Might be able to get some more hits and confirmed hits using trace recalling because of ambiguity sequence alignment. How?.
Dec 21 2005
* this part isn’t quite done and some of the non-hit confirmed hit cases look a little funny
A slight misalignment causes one read to be flagged as an “alternate exon” and the other to be flagged as a “clean alternate exon”… the black one is probably right
Recalled sequence picks up where you would expect if the single trace part were corrupted by noise
12 bp alternate splice site