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World Register of Marine Species and Aphia IT platform

World Register of Marine Species and Aphia IT platform. Ward Appeltans info@marinespecies.org. Introduction to WoRMS Framework What (data & statistics) Who (editorial board, SC and data managers) Aphia IT platform (How) online edit interface

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World Register of Marine Species and Aphia IT platform

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  1. FADA workshop, 5-7 December 2008 in Bruges (Belgium) World Register of Marine Speciesand Aphia IT platform Ward Appeltans info@marinespecies.org

  2. Introduction to WoRMS Framework What (data & statistics) Who (editorial board, SC and data managers) Aphia IT platform (How) online edit interface Publication (website, citations, database download) Tools (taxon match, webservice) Future plans FADA workshop, 5-7 December 2008 in Bruges (Belgium) overview

  3. In 1999, VLIZ developed Aphia, a taxonomic database to support local researchers, and which resulted in a species register for the Belgian part of the North Sea. In 2004, VLIZ hosts the European Register of Marine Species and sets up the European Node of OBIS , with funding from MarBEF (EU FP7) From 2004 onwards, more registers came to VLIZ and more grew from Aphia, via the online edit interface (e.g. RAMS)=>World Register of Marine Species FADA workshop, 5-7 December 2008 in Bruges (Belgium) History

  4. FADA workshop, 5-7 December 2008 in Bruges (Belgium)

  5. FADA workshop, 5-7 December 2008 in Bruges (Belgium) www.marinespecies.org

  6. FADA workshop, 5-7 December 2008 in Bruges (Belgium) www.marbef.org/data/erms.php

  7. FADA workshop, 5-7 December 2008 in Bruges (Belgium) www.marinespecies.org/copepoda

  8. FADA workshop, 5-7 December 2008 in Bruges (Belgium) www.marinespecies.org/hab

  9. FADA workshop, 5-7 December 2008 in Bruges (Belgium) www.scarmarbin.be/rams.php

  10. Minimal Classification, Species name, Authority and publication date Highly desired Basionym, Original publication reference, Holotype information (type locality, museum, number, ..) Optional additional synonyms, references, images, morphological description, specimens, distribution, feeding type, host, weblinks, PDFs FADA workshop, 5-7 December 2008 in Bruges (Belgium) What data?

  11. FADA workshop, 5-7 December 2008 in Bruges (Belgium) Statistics (+ ~12,000 non-marine names; 5%)

  12. The amount of data is increasing. In 2008: 74,000 names were added; 26,000 names were updated. 30% of all taxon names is not validated as yet (this was 40% in June 2008) FADA workshop, 5-7 December 2008 in Bruges (Belgium) Data quality

  13. Taxonomic editors in Aphia: 176 WoRMS: 87 ERMS: 72 RAMS: 58 FADA: 58 ERMS & WoRMS: 32 RAMS & WoRMS: 12 ERMS & RAMS: 11 Aphia & FADA: 10 WoRMS, ERMS and FaEu united in SMEBD FADA workshop, 5-7 December 2008 in Bruges (Belgium) Taxonomic editors

  14. FADA workshop, 5-7 December 2008 in Bruges (Belgium) www.smebd.eu

  15. 10 SC members (1 chair) Yearly election Data managers (one ex-officio SC member) IT developer FADA workshop, 5-7 December 2008 in Bruges (Belgium) Steering Committee &Data Managers

  16. FADA workshop, 5-7 December 2008 in Bruges (Belgium) Expert info and access control Security Tools db Aphia db IMIS db Contact details People Insitutions Literature Datasets Projects .. • Aphia Editor details • Name and login information • Aphia taxon ID • Aphia collection • e.g. WoRMS, ERMS, RAMS, .. • Login details • Username • Password • IMIS ID • Access context • e.g. Aphia, VLIMAR, photogallery, news, MDA, ..

  17. FADA workshop, 5-7 December 2008 in Bruges (Belgium)

  18. Hard & software: MS SQL PHP out/input webinterface MS Access front end manage editors, quality control (e.g. find duplicates) Apache running on Windows server back-up (daily) FADA workshop, 5-7 December 2008 in Bruges (Belgium) Aphia platform

  19. FADA workshop, 5-7 December 2008 in Bruges (Belgium) Online Edit interface

  20. FADA workshop, 5-7 December 2008 in Bruges (Belgium)

  21. FADA workshop, 5-7 December 2008 in Bruges (Belgium)

  22. FADA workshop, 5-7 December 2008 in Bruges (Belgium)

  23. FADA workshop, 5-7 December 2008 in Bruges (Belgium)

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  25. FADA workshop, 5-7 December 2008 in Bruges (Belgium)

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  32. Data are entered/edited by Taxonomic experts (TE) Other experts Data managers (based on publications/datasets, or on behalf of TE) Quality flags for: Record status Checked by TE or added by DMT Public/non-public flags FADA workshop, 5-7 December 2008 in Bruges (Belgium) Data quality

  33. FADA workshop, 5-7 December 2008 in Bruges (Belgium)

  34. When verified by expert/contributed by GSD Editors (Year). Taxon + Authority. In: GSD title. Accessed through the World Register of Marine Species at URL on [date]. [author(s)] [Year]. [chapter] in [Book]. [Publisher]. [Page] When not verified => WoRMS is author FADA workshop, 5-7 December 2008 in Bruges (Belgium) Citations

  35. FADA workshop, 5-7 December 2008 in Bruges (Belgium) MS Access download

  36. 1. All the taxonomic and related information WoRMS ID Taxon name linked to parent taxon Sources Environment flags Notes Vernacular names Distribution records Collection context 2. Taxon tree to browse the taxonomic hierarchy E.g. export excel sheet of all taxa of Isopoda belonging to the ERMS context FADA workshop, 5-7 December 2008 in Bruges (Belgium) MS Access download

  37. Find information on a taxon (any rank) taxa described by a particular author taxa described in a particular year a taxon by ID (WoRMS ID/TSN ID) a taxon by common name a reference, and list species a geographic location, and list species a picture of a species a specimen Select extra criteria: only valid names (on/off), only marine names (on/off) FADA workshop, 5-7 December 2008 in Bruges (Belgium) website

  38. Extra search criteria for Taxonomic editors: Limit to non-checked (not expert validated) names Limit to Marine/Brackish/Fresh/Terrestrial environment (Yes/No/Unknown) Limit to a specific collection and/or exclude a specific collection List latest additions/edits by a person after a certain date FADA workshop, 5-7 December 2008 in Bruges (Belgium) website

  39. FADA workshop, 5-7 December 2008 in Bruges (Belgium)

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  45. FADA workshop, 5-7 December 2008 in Bruges (Belgium)

  46. FADA workshop, 5-7 December 2008 in Bruges (Belgium)

  47. FADA workshop, 5-7 December 2008 in Bruges (Belgium)

  48. FADA workshop, 5-7 December 2008 in Bruges (Belgium)

  49. FADA workshop, 5-7 December 2008 in Bruges (Belgium)

  50. FADA workshop, 5-7 December 2008 in Bruges (Belgium)

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