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By Aimee Stewart, J.H. Beach, C.J. Grady, J. Cavner University of Kansas Biodiversity Institute - PowerPoint PPT Presentation


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Lifemapper: A Web-services Architecture for Integrating Collections into Broader Research Communities. By Aimee Stewart, J.H. Beach, C.J. Grady, J. Cavner University of Kansas Biodiversity Institute. http:// www.lifemapper.org. Lifemapper brings together …. Biodiversity Inventory.

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Lifemapper: A Web-services Architecture for Integrating Collections into Broader Research Communities

By

Aimee Stewart, J.H. Beach, C.J. Grady, J. Cavner

University of Kansas Biodiversity Institute

http://www.lifemapper.org


Lifemapper brings together
Lifemapper brings together …

Biodiversity Inventory

(Macro) Ecological Modeling

Global Climate Change


Integrate catalog for transparent repeatable science
Integrate & Catalog for Transparent, Repeatable Science

Work Flow Tools

Integration

Repeatable Transparent Science

Archiving

Ellison, A. 2010. J. Ecology

EEML


Lifemapper services
Lifemapper Services

Web Services

QuantumGIS

Metadata

Analysis

VisTrails

Data

Internet

Specify

Narrative

Visualization


Lifemapper back end
Lifemapper Back-end

Pipeline

Data Archive

Compute Resources



Lifemapper front end
Lifemapper Front-end

Software

Internet

SHP

GTIFF

<EML>

ISO 19115

REST

Standards


Lifemapper relationships
Lifemapper Relationships

Research

Client/Server

Clients

Servers



Lifemapper tools
Lifemapper Tools

LmSDM:

Species Distribution Modeling

Modeling

&

Analysis

LmRAD:

Range and Diversity


Lmsdm species distribution modeling
LmSDM:Species Distribution Modeling

Species Occurrence Data

SDM Modeling Algorithm

Predicted Habitat

Environmental Data


Lmrad range and diversity
LmRAD:Range and Diversity

Presence Absence Matrix (PAM)

Species Habitat Data

Range and Diversity

Quantifications


Metadata
Metadata!!!

  • Repeatability and Reproducibility

  • Process metadata

  • Extended EML

    • Describes steps / workflow

    • Read by EML-Reader

    • Transformed into Narratives


http://www.youtube.com/watch?v=VCFixtqlimg


New directions
New Directions

  • With UNM EDAC and UTEP Cyber-ShARE

    • Extend environmental layers to NASA data

    • Provenance between EDAC and LM services

  • SDM of fossil invertebrates

  • Advanced 3-d viz using GPUs and openGL

  • Identify location based on species


Take home
Take home!

  • Web services exposing tools and data

    • Species Distribution Modeling

    • Range and Diversity

  • Standards allowing mix and match

  • Clients simplifying access

  • Metadata simplifying re-execution

  • Collaborations making us happy


Lifemapper funded by
Lifemapper funded by:

U.S. National Science Foundation NSF EPSCoR 0553722

NSF EPSCoR 0919443

EHR/DRL 0918590

BIO/DBI 0851290

OCI/CI-TEAM 0753336

http://www.lifemapper.org

astewart@ku.edu


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