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Project plan. Modeling rat bloodstream using fluorescence imaging data. Alander et al. (2012). The Research Project. Rats with artificial coronary thrombosis Chest blood vessel to heart muscle Replace bypass for people with bad coronary vessels ?. Team.

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Project plan

Project plan

Modeling rat bloodstream using fluorescence imaging data


Alander et al. (2012)


The research project
The Research Project

  • Rats with artificialcoronarythrombosis

  • Chestbloodvessel to heartmuscle

  • Replacebypass for people with badcoronaryvessels?


Team

Students: Juho & Kirill

Instructor: prof. JarmoAlander


Structure of the work
Structure of the work

Weeks 3–5: Familiarization to the theory and methods and project planning. Weeks 6–7: Investigation on the data and selecting the methods. Weeks 8–14: Iterative modeling and testing. (week 9: midterm report)Weeks 15–19: Finishing up the modeling, preparing for the demo and documentation. Week 20: Demo. Week 21: Finishing up the documentation.


Risks
Risks

  • Workload

  • Data

  • Communication


References
References

  • Jarmo T. Alander, Ilkka Kaartinen, Aki Laakso, Tommi Pätilä, Thomas Spillmann, Valery V. Tuchin, Maarit Venermo, and Petri Välisuo. 2012. A review of indocyaninegreenfluorescentimaging in surgery. Journal of BiomedicalImaging 2012, Article 7 (January 2012), 1 pages. DOI=10.1155/2012/940585 http://dx.doi.org/10.1155/2012/940585 URL: http://dl.acm.org/citation.cfm?id=2336497&bnc=1

  • Cyrus B. Amoozegar, Tracy Wang, Matthew B. Bouchard, Addason F. H. McCaslin, William S. Blaner, Richard M. Levenson and Elizabeth M. C. Hillman, "Dynamiccontrast-enhancedopticalimaging of in vivoorganfunction", Journal of BiomedicalOptics, 17(9)96003, 2012. URL: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3434471/pdf/JBO-017-096003.pdf

  • Elizabeth M. C. Hillman, Cyrus B. Amoozegar, Tracy Wang, Addason F. H. McCaslin, Matthew B. Bouchard, James Mansfield and Richard M. Levenson, "In vivoopticalimaging and dynamiccontrastmethods for biomedicalresearch", PhilosophicalTransactions of the Royal Society A, Mathematical, Physical & Engineering Sciences, 369(1955)4620-4643, 2011. DOI 10.1098/rsta.2011.0264 URL: http://rsta.royalsocietypublishing.org/content/369/1955/4620

  • Taeyun Ku and ChulheeChoi, "Noninvasiveopticalmeasurement of cerebralbloodflow in miceusingmoleculardynamicsanalysis of indocyaninegreen", PLoS One, 7(10)e48383, 2012. URL: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3485229/

  • RelevantWikipediaarticles

    • http://en.wikipedia.org/wiki/System_identification

    • http://en.wikipedia.org/wiki/Indocyanine_green

    • http://en.wikipedia.org/wiki/Fluorescence_image-guided_surgery


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