Hpc at hcc jun wang
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HPC at HCC Jun Wang. hcc.unl.edu. Outline of Workshop2. Familiar with Linux file system Familiar with Shell environment Familiar with module command Familiar with queuing system How to submit a serial job How to submit a MPI parallel job. HPC at HCC Jun Wang. hcc.unl.edu.

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HPC at HCC Jun Wang

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Hpc at hcc jun wang

HPC at HCCJun Wang

hcc.unl.edu

Outline of Workshop2

Familiar with Linux file system

Familiar with Shell environment

Familiar with module command

Familiar with queuing system

How to submit a serial job

How to submit a MPI parallel job


Hpc at hcc jun wang1

HPC at HCCJun Wang

hcc.unl.edu

Familiar with Linux file system

Basic File System Structure

Basic File System Partitions

On tusker and sandhills:

$HOME (/home) is read-only on computing nodes, 10 GB space/group, daily backup

$WORK (/work) is writable on all nodes, 50 TB space/group, no backup


Hpc at hcc jun wang2

HPC at HCCJun Wang

hcc.unl.edu

Familiar with BASH Shell environment


Hpc at hcc jun wang3

HPC at HCCJun Wang

hcc.unl.edu

Familiar with module command


Hpc at hcc jun wang4

HPC at HCCJun Wang

hcc.unl.edu

Familiar with module command


Hpc at hcc jun wang5

HPC at HCCJun Wang

hcc.unl.edu

Familiar with queuing system-PBS


Hpc at hcc jun wang6

HPC at HCCJun Wang

hcc.unl.edu

Familiar with queuing system-SLURM


Hpc at hcc jun wang7

HPC at HCCJun Wang

hcc.unl.edu

How to submit a serial job


Hpc at hcc jun wang8

HPC at HCCJun Wang

hcc.unl.edu

How to submit a serial job


Hpc at hcc jun wang9

HPC at HCCJun Wang

hcc.unl.edu

How to submit a MPI parallel job


Hpc at hcc jun wang10

HPC at HCCJun Wang

hcc.unl.edu

How to submit a MPI parallel job


Hpc at hcc jun wang11

HPC at HCCJun Wang

hcc.unl.edu

More useful SLURM commands

“sinfo” : Check available partitions and their status


Hpc at hcc jun wang12

HPC at HCCJun Wang

hcc.unl.edu

More useful SLURM commands

“scontrol show job YourJobID”: Check details of a specific job


Hpc at hcc jun wang13

HPC at HCCJun Wang

hcc.unl.edu

Thank You!

To be continued:

How to run Gaussian09

How to compile and run GAMESS

How to compile and run GROMACS


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