1 / 6

Automatic functional transcriptomic annotation Bioinformatic school CIBA

Automatic functional transcriptomic annotation Bioinformatic school CIBA. Manuel Ruiz (CIRAD) Alexis Dereeper (IRD) Marilyne Summo (CIRAD). Transcriptomic data. Genomic expression changes. Signal. expressed proteins Transcriptomic analysis => functions adaptation.

napua
Download Presentation

Automatic functional transcriptomic annotation Bioinformatic school CIBA

An Image/Link below is provided (as is) to download presentation Download Policy: Content on the Website is provided to you AS IS for your information and personal use and may not be sold / licensed / shared on other websites without getting consent from its author. Content is provided to you AS IS for your information and personal use only. Download presentation by click this link. While downloading, if for some reason you are not able to download a presentation, the publisher may have deleted the file from their server. During download, if you can't get a presentation, the file might be deleted by the publisher.

E N D

Presentation Transcript

  1. Automatic functional transcriptomic annotationBioinformatic school CIBA Manuel Ruiz (CIRAD) Alexis Dereeper (IRD) Marilyne Summo (CIRAD)

  2. Transcriptomic data Genomic expression changes Signal expressed proteins Transcriptomic analysis => functions adaptation

  3. Transcriptomic analysis High-throughput sequencing : => Higher quantity of data. => Lesser cost. Problematic: * How to store data ? * How to analyse data ?

  4. Available tools • ESTtik : • « Expressed Sequence Tag Treatment and Investigation Kit » • Automatic transcriptomic annotation package • Can manage 454 data • Integrate the analysis in a complete database and request web interface. http://esttik.cirad.fr

  5. 454 data Transcripts Random cutting 200 – 800 bases 454 sequencing => ~380 bases Transcript contig assembly Consensus sequence

More Related