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Integrating Biodiversity Data

Integrating Biodiversity Data. Standards and Interoperability Donald Hobern, GBIF Programme Officer for Data Access and Database Interoperability dhobern@gbif.org Indaiatuba, Brazil, 21 October, 2002. Biodiversity Data. Complex Models. Environmental Impact. Ecosystems. Phylogeny.

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Integrating Biodiversity Data

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  1. Integrating Biodiversity Data Standards and Interoperability Donald Hobern, GBIF Programme Officer for Data Access and Database Interoperability dhobern@gbif.org Indaiatuba, Brazil, 21 October, 2002

  2. Biodiversity Data Complex Models Environmental Impact Ecosystems Phylogeny Analysis Climate Names Distribution Taxa Primary Data Biochemistry Observations Descriptions Specimens Exchange Protocols Federated Search Networks Exchange

  3. Biodiversity Data Standardisation Complex Models Environmental Impact Ecosystems Phylogeny Analysis Climate Names Distribution Taxa Taxonomic Names Primary Data ABCD SDD Biochemistry Observations Descriptions Specimens Exchange Protocols DiGIR XML HTTP Federated Search Networks Exchange

  4. GBIF Node Responsibilities GBIF Portal • Network • Standards • Tools • Consolidated Data • Network • Standards • Tools • Identify (local) Data Nodes • Forward registration metadata from Data Nodes • National Language Interfaces Data Node Participant • Data • Metadata • Encourage participation • Manage registration of Data Nodes

  5. Data Flow within GBIF Network User Browser HTML Data HTML Data GBIF Portal Participant Node Participant Node Aggregated Data Aggregated Data Service Metadata Service Metadata Service Metadata Detailed Specimen Data Detailed Specimen Data Specimen Index Data Service Metadata Collection Node Collection Nodes

  6. Example Interactions: Collection View User Browser HTML Data Collection Node

  7. Example Interactions: Global View User Browser HTML Data GBIF Portal Specimen Summary Data Collection Node Collection Node

  8. Example Interactions: Participant View User Browser HTML Data Participant Node Aggregated Specimen Index Data Specimen Summary Data GBIF Portal Collection Node Collection Node

  9. Participant Network Node Specimen Data (Network-specific Format) Network Collection Nodes Example Interactions: Participant Network User Browser HTML Data GBIF Portal Specimen Summary Data Specimen Summary Data Collection Node

  10. GBIF DADI Work Programme • Establish the data standards and interchange mechanisms required to integrate species-level and specimen-level data within the GBIF Network • Identify and develop the foundational components of the network as early as possible • Provide tool kits to assist node managers to bring their databases online as rapidly as possible • Promote a community (and open-source) development model for GBIF components

  11. GBIF Standards Requirements • Requirements for 2003 • Federated Data Access (DiGIR) • Collection Data Exchange Schema (ABCD) • Name Data Exchange Schema (Taxonomic Names) • Geographical Services (Spatial Data) • Resource Metadata • Future requirements: • Structured Descriptive Data (SDD) • Also required: • Description of user requirements for GBIF network

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