Production Priorities. Genome protein sets User Support Production systems change Database changes On-the-fly species gene associations. Genome protein sets (gp2protein). FASTA files of all proteins believed to occur from a genome, not just what is curated Provide standard defline format
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Only annotations with IMP, IDA, IPI, IGI and IEP
To which list do we want users to send questions, bug reports, …
Currently GODB & AmiGO run on main SGD database server
Moving GO to cluster environment where there will be multiple GO DB servers and GO HTML servers
Last year started building GO Lite DB three times a week. This means AmiGO is always using 2-4 day old data.
More cluster nodes are on order that may allow us to do daily updates. (no need for GOTerm DB)
CVS via HTTP
Build updating script, currently can only rebuild from scratch
Switch to Chado
This would also allow the incorporation of new data types
GOID & Term history tracking
Need to consider what files need to be archived
For some file types that are just derivative we can just provide a script