Dynamic Programming. How to match up sequences and have the matches make sense and be quantitative. Question is. How does a specific sequence compare to one other specific sequence? Is it similar? If so, at what level? Can’t compare every base to every other base--to complex.
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How to match up sequences and have the matches make sense and be quantitative
(Could have others; could choose different values)
Plant -amylases are located in different cellular compartments
Share a common ancestor
Homologues derived by gene duplication
Functions may vary
Look for differences
Homologues derived by speciation
Look for similarities
AMY1 has a three amino acid deletion
Active site residues