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DAVID david.abcc.ncifcrf/ Genome Biol. 2003;4(5):P3 Analysis of gene lists using DAVID

DAVID http://david.abcc.ncifcrf.gov/ Genome Biol. 2003;4(5):P3 Analysis of gene lists using DAVID http://www.nature.com/nprot/journal/v4/n1/pdf/nprot.2008.211.pdf. Access tool from here. Upload dataset. Use test dataset. Dataset1_chicken affy.txt. Select Affy ID & gene list.

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DAVID david.abcc.ncifcrf/ Genome Biol. 2003;4(5):P3 Analysis of gene lists using DAVID

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  1. DAVID http://david.abcc.ncifcrf.gov/ Genome Biol. 2003;4(5):P3 Analysis of gene lists using DAVID http://www.nature.com/nprot/journal/v4/n1/pdf/nprot.2008.211.pdf

  2. Access tool from here

  3. Upload dataset

  4. Use test dataset Dataset1_chicken affy.txt Select Affy ID & gene list

  5. Select species

  6. Select Gallus gallus as background

  7. Results

  8. Annotation chart view

  9. What the chart means (http://david.abcc.ncifcrf.gov/helps/functional_annotation.html#summary)

  10. Save results

  11. Results Download Input IDs

  12. Results

  13. Results

  14. What the results mean

  15. Downlaod rEsults

  16. EasyGO BMC Genomics. 2007 Jul 24;8:246. http://bioinformatics.cau.edu.cn/neweasygo/

  17. Access the tool

  18. Check supported data types

  19. Start analysis

  20. Use chicken affy dataset 1 Choose species Data type Type of test Email notification optional

  21. Search status

  22. Results Results browse options

  23. Flat Form p-value

  24. Plain Text

  25. Browse results in graph mode Expand immune system process

  26. Tree View Color scale is based on p-value

  27. User manual

  28. Earlier version

  29. Supported data types

  30. Dataset1_chicken affy.txt will not work as affy IDs are not an option that is available when using earlier version of the tool Only Chicken Gene products accepted

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