RECFA
This presentation is the property of its rightful owner.
Sponsored Links
1 / 22

John Hassard, Department of Physics, Imperial College Founder and CTO deltaDOT deltadot PowerPoint PPT Presentation


  • 88 Views
  • Uploaded on
  • Presentation posted in: General

RECFA Label-Free Intrinsic Imaging- LFII™ Particle Physics and the Future of Biomedicine LFII™ technology in High Performance Capillary Electrophoresis in life sciences, diagnostics and analytical chemistry. John Hassard, Department of Physics, Imperial College Founder and CTO deltaDOT

Download Presentation

John Hassard, Department of Physics, Imperial College Founder and CTO deltaDOT deltadot

An Image/Link below is provided (as is) to download presentation

Download Policy: Content on the Website is provided to you AS IS for your information and personal use and may not be sold / licensed / shared on other websites without getting consent from its author.While downloading, if for some reason you are not able to download a presentation, the publisher may have deleted the file from their server.


- - - - - - - - - - - - - - - - - - - - - - - - - - E N D - - - - - - - - - - - - - - - - - - - - - - - - - -

Presentation Transcript


John hassard department of physics imperial college founder and cto deltadot deltadot

RECFALabel-Free Intrinsic Imaging- LFII™ Particle Physics and the Future of BiomedicineLFII™ technology in High Performance Capillary Electrophoresisin life sciences, diagnostics and analytical chemistry

John Hassard,

Department of Physics, Imperial College

Founder and CTO deltaDOT

www.deltadot.com

[email protected]

May 11th 2007


Particle physics vs biomedicine

Analyse

correlate

Particle Physics vs Biomedicine

  • Funding difficult and

  • getting more so

  • Highly evolved

  • scientific methodology –

  • cutting edge technology

  • Really interesting –

  • seek simplicity


Separation and analysis of proteins

Conventional techniques (CE, MS, HPLC, 2D SDS PAGE…) separate in one or two usually orthogonal dimensions

Key performance indicators are sensitivity, resolution, quantification accuracy, throughput, dynamic ranges in more than one parameter (eg Mw, concentration)

Typically, there is a play-off between key parameters. Eg increase in sensitivity can result in decrease in resolving power (more label needed); increase in throughput can lead to less quantification

LFII is a new approach which rewrites these trade-offs by using proprietary multipixel approach based on HEP algorithms.

Separation and analysis of proteins


John hassard department of physics imperial college founder and cto deltadot deltadot

Resolution and spectral analyses:LFII draws on techniques from other disciplines

Use spectral information, excellent instrumentation and time-elapse algorithms

Data

Information

Knowledge

astrophysics

Particle physics


John hassard department of physics imperial college founder and cto deltadot deltadot

UV Light

Source

512 electropherograms

Signal

UV filter

Optics

Separation

Optics

Data

Processing

(GST & EVA)

Detector

Multipixel Detection and Vertexing

5 positions

(214, 254, 280nm)

1:1 image

Standard capillary

512 pixel PDA


Generalised separation transform

R

Generalised Separation Transform

In a 4 tesla field:

R a 1/PT

Pair-wise summation of x-y points in 2D space allows a peak in R-space to be developed in an unbiased way hence to find the track in 3D.

In z-t space in a separation, a similar transform exists in v-space.

This allows us to aggregate millions of images from multiple pixels in an unbiased way – the GST


John hassard department of physics imperial college founder and cto deltadot deltadot

Generalised Separation Transform (GST)

  • Based on CMSTR – track finder for CMS and work by David Colling and JH : Signal bands move with known velocity function.

  • GST takes all pixels and for each time frame and each pixel calculates a velocity which a biomolecule would have to have to reach that pixel at that time.

  • This is then histogrammed according to a weight determined by the Beer-Lambert absorption

  • This results in an unbiased determination of velocity while retaining all peak shape information

  • It requires a ‘virtual vertex’ to be assumed. Equiphase vertexing is a more specific application of GST

  • Increases S/N & Retains Peak Shape


John hassard department of physics imperial college founder and cto deltadot deltadot

Early use of vertexing to

identify small signals


Equiphase vertexing algorithm eva

Peak finding

Equiphase Vertexing Algorithm (EVA)

  • Based on GST, TASSO/Aleph/Babar/D0 vertexing work and work by D. Sideris. The first stage of EVA processing is to perform peak finding on each of the 512 Electropherograms

  • The time and amplitude of each peak is determined

  • The Equiphase Map is constructed using every identified peak for each pixel

Construct

Equiphase map


Sample run profile bacterial cell analysis

Sample-run profile(Bacterial cell analysis)


The vertex

The Vertex

Finding the vertex allows us to identify the unlabelled protein or DNA bands effectively increasing the signal to noise

Single vertexes are generally used but multiple vertexing can also be achieved

Detecting multiple vertices allows higher throughput, improved systematics and allows sample injected at different times to be identified e.g Virtual colour in DNA sequencing

Work by Gary Taylor, Phil Lewis, John Hassard and others


John hassard department of physics imperial college founder and cto deltadot deltadot

Powerful Multipixel Detection Algorithms

Raw Data

GST

EVA


John hassard department of physics imperial college founder and cto deltadot deltadot

Multiple Analyses


John hassard department of physics imperial college founder and cto deltadot deltadot

E.coli Analysis

Conventional PAGE

Conventional CE

deltaDOT Peregrine

Relative Standard Deviation

Peak Time 0.98%

Peak Height 4.56%

Overlay of the EVA processed data of nine consecutive E. coli lysate runs all separated under the same conditions.


John hassard department of physics imperial college founder and cto deltadot deltadot

Glycoproteins

Relative Standard Deviation

Peak Time 0.23%

Peak Height 3.03%

Ribonuclease B Glycoforms


John hassard department of physics imperial college founder and cto deltadot deltadot

Analysis of Antibody Standard

An overlay of EVA-processed data of 8 consecutive runs of Beckman Control Standard IgG in denaturing condition.


John hassard department of physics imperial college founder and cto deltadot deltadot

Peptide analysis

Relative Standard Deviation

Peak Time 0.44%

Peak Height 2.98%

deltaDOT data

Peptide Standards Molecular weights (Da):

1.Leucin enkephalin: 5552.Bradykinin fragment: 572

3.Methionine enkephalin: 5734.Bradykinin: 1059

5.Oxytocin: 1009 6.[Arg8]- Vasopressin: 1087

7.Luteinising hormone releasing hormone: 12078.Substance P: 1347

9.Bombesin: 1638


John hassard department of physics imperial college founder and cto deltadot deltadot

Bacteria & Viruses

Escherichia coli.

Baculovirus.

Panel A (single pixel)

Panel B (512 pixels EVA data)

Dilution series on stock 2.9E7 pfu/mL.

1:10 1:20 1:30 1:40

In this initial experiment the peaks show a smallvariation, the peaks correspond to the dilution colour.

Good linearity is shown in the initial data set, further experiments are in progress


Advantages of lfii tm in chips

High sensitivity, quantification, dynamic range

High Resolution

Possibility for multiple simultaneous injections

Reduced Cost

S/N a L, compared to S/N a L3 for labelled systems

Advantages of LFIITM in chips


John hassard department of physics imperial college founder and cto deltadot deltadot

Latest chip

DNA data


Particle physics inputs

Algorithms

Detectors

Grid

Materials

Techniques (eg Babar ADC approach)

Problem solving approach

I’d be happy to discuss any ideas you have ([email protected])

Particle physics inputs


Conclusions

We have established LFII as the most promising new approach in biotechnology. At the heart of the world’s biggest rapid vaccine development program

LFII rewrites and reduces the compromises inherent in separation technologies, using a multisensor approach derived from other fields. Analysis power is a combination of several parameters, and LFII optimises this.

LFII is agnostic as to target, and allows powerful relatively bias-free approaches to analysis

LFII is based entirely on things particle physicists take for granted

Particle physics cannot take for granted the continued goodwill and funding from governments without a redoubling of effort to show wealth creation.

Conclusions


  • Login