1 / 7

NCI-Frederick SAIP & ABCC Image Analysis Workshop ITK-SNAP

NCI-Frederick SAIP & ABCC Image Analysis Workshop ITK-SNAP. Tuesday, May 25, 2010. Acknowledgements. Curtis Lisle, PhD (KnowledgeVis) Yanling Liu, PhD (ABCC) Paul A. Yushkevich, PhD (Assistant Professor, UPenn). SAIP/ABCC Collaboration.

jprager
Download Presentation

NCI-Frederick SAIP & ABCC Image Analysis Workshop ITK-SNAP

An Image/Link below is provided (as is) to download presentation Download Policy: Content on the Website is provided to you AS IS for your information and personal use and may not be sold / licensed / shared on other websites without getting consent from its author. Content is provided to you AS IS for your information and personal use only. Download presentation by click this link. While downloading, if for some reason you are not able to download a presentation, the publisher may have deleted the file from their server. During download, if you can't get a presentation, the file might be deleted by the publisher.

E N D

Presentation Transcript

  1. NCI-Frederick SAIP & ABCCImage Analysis WorkshopITK-SNAP Tuesday, May 25, 2010

  2. Acknowledgements • Curtis Lisle, PhD (KnowledgeVis) • Yanling Liu, PhD (ABCC) • Paul A. Yushkevich, PhD (Assistant Professor, UPenn)

  3. SAIP/ABCC Collaboration This event is supported by a collaborative effort between NCI Small Animal Imaging Program (SAIP) and NCI Advanced Biomedical Computing Center (ABCC) Instruct investigators in image analysis methods Today’s tutorial covers ITK-SNAP, a software package available for the viewing and analysis of volume datasets

  4. Accessing Images and Experimental Results Datasets are securely stored by ABCC using MIPORTAL and BlueArc Thin-client analysis stations are available in Building 376 Vendor specific software Ultrasound (VisualSonics) Bioluminescence (Xenogen) Fluorescence (CRi Maestro) Obtain USB key from SAIP staff SAIP staff can train A Remote Desktop server is available for remote access within the NIH domain Access to the remote desktop: purchase of a one-time access license ($90 per simultaneous user) Programs: ITK-SNAP, SLICER, MIPAV, InVivoscope (SPECT/CT), DCE-MRI analysis Benefit One site for all analysis programs ABCC/SAIP modules Amulet

  5. Accessing your images MIPORTAL Archive for 3D image sets from SAIP scanners To obtain login access or problems contact the SAIP (x 7526) WEB URL: http://129.43.3.141/MIPortal/

  6. Remote Desktop ITK-SNAP, other open-source and vendor-provided programs available on the desktop Access MIPORTAL through the internet browser Use Microsoft Remote Desktop Client or similar tool for access to server http://saip-remote.ncifcrf.gov

  7. Assistance If you need assistance: Running ITK-SNAP on your dataset Contact the ABCC Helpdesk: Helpuser@ncifcrf.gov (301) 846-5555 The helpdesk will get you connected to someone who can assist with your problem (ABCC and SAIP)

More Related