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Microbial genome data resources. Reportor : Zhou Xingrong. Introduction. Genome : All of the genetic information, the entire genetic complement, all of the hereditary material possessed by an organism.

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Microbial genome data resources

Microbial genome data resources

Reportor:Zhou Xingrong



Genome: All of the genetic information, the entire genetic complement, all of the hereditary material possessed by an organism.

Metagenome: the genomes of the total micro biota found in nature and involves cloning of total DNA isolated from an environment sample.


  • Metagenome sequence data processing is in the early stages of development.

  • We need assess the scientific value of microbial genome data.


Microbial genome data lifecycle
Microbial genome data lifecycle over 1000 other projects ongoing and more in the process of being launched.


Figure 1 Microbial genome data lifecycle over 1000 other projects ongoing and more in the process of being launched.


individual genomes over 1000 other projects ongoing and more in the process of being launched.

NCBI’s Entrez Gene , EBI’s Integr8, UCSC Genome Browser

Multigenome

CMR, ERGO, Microbes Online, PUMA2, IMG, and MBGD


  • Organism-specific annotation resources over 1000 other projects ongoing and more in the process of being launched.

    PeerGAD,ASAP

  • Integrated annotation resources

    SEED, PUMA2

  • Metagenome resources

    GenBank, IMG/M,Megx.net


Microbial genome data management
Microbial genome data management over 1000 other projects ongoing and more in the process of being launched.


1 data management characteristics
1 over 1000 other projects ongoing and more in the process of being launched.、data management characteristics

  • employ established technologies

  • involve organizing data according to a data model

  • require integrating data from multiple resources.


2 presents advantages
2 over 1000 other projects ongoing and more in the process of being launched.、presents advantages

  • local data availability

  • query performance

  • ability to review

  • curate data


Conclusions
Conclusions over 1000 other projects ongoing and more in the process of being launched.




Thanks for your attention
THANKS FOR YOUR ATTENTION! genome data resources would benefit the maintenance of existing resources and the development of new resources.


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