Us gbif tools and services
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Giri Palanisamy NBII , ORNL Mike Frame NBII, USGS. US GBIF Tools and Services. August 12 th , 2010. NBII-GBIF Services. Hosts GBIF mirror for North America Various data extraction services and visualizations IPT prototype installation Trainings/Workshops on DiGIR and IPT

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US GBIF Tools and Services

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Us gbif tools and services

Giri Palanisamy

NBII, ORNL

Mike Frame

NBII, USGS

US GBIF Tools and Services

August 12th , 2010


Nbii gbif services

NBII-GBIF Services

  • Hosts GBIF mirror for North America

  • Various data extraction services and visualizations

  • IPT prototype installation

  • Trainings/Workshops on DiGIR and IPT

  • Operates UDDI service

  • Supports several Cooperative agreements at Museum’s & Herbaria in US


Gbif data portal

GBIF Data Portal

GBIF Site: http://data.gbif.org

U.S. Mirror: http://us.mirror.gbif.org

World:

- 201,275,468 occurrence records

- 318 data providers

USA:

- 83,607,198 records

- 91 data providers


Web services to query gbif data

Web services to query GBIF data

OGC web services:

  • Taxon data service: http:// us.mirror.gbif.org/ws/rest/taxon

  • Occurrence record data service: http:// us.mirror.gbif.org/ws/rest/occurrence

  • Occurrence density data service: http:// us.mirror.gbif.org/ws/rest/density

  • Dataset metadata service: http:// us.mirror.gbif.org/ws/rest/resource

  • Data provider metadata service: http:// us.mirror.gbif.org/ws/rest/provider

  • Data network metadata service: http:// us.mirror.gbif.org/ws/rest/network

  • More information: http://wiki.gbif.org/dadiwiki/wikka.php?wakka=DeveloperAPIs

  • Web services to query US GBIF data (under development)


Gbif data analysis and extractions for nbii partners

GBIF Data Analysis And Extractions for NBII Partners

  • Example GBIF Data Extractions:

    • Extract data for specific State(s), countries.

    • Extract data for list of species (plants, birds, butterflies etc..)


Gbif data analysis extractions cont

GBIF Data Analysis Extractions Cont..


Nbii customized widgets for exploring gbif data

NBII Customized widgets for exploring GBIF data

GBIF Widget for Vermont Area


Us gbif tools and services

Web Services to Query US GBIF Data

  • Based on NBII CH/Lucene/Solr index

  • Species occurrences query

    • http://nbii-gbif.ornl.gov/us_solr/select?indent=on&version=2.2&q=scientific_name%3A%22Abildgaardia ovata%22&start=0&rows=100&fl=latitude%2Clongitude&qt=standard&wt=standard&explainOther=&hl.fl=


Us gbif tools and services

Simple Web Services Client to get occurrence counts

http://mercury.ornl.gov/gbifUtility/


Us gbif tools and services

  • Other NBII-GBIF services

  • GBIF collection metadata records (EML) are now available in the NBII metadata clearinghouse and in the NBII catalog search.

  • IPT prototype installation available in the NBII servers (for testing prupose)


Us gbif tools and services

  • Species Level xml files for NBII Catalog search


Us gbif tools and services

GBIF Species Records in NBII Catalog Search


Us gbif tools and services

  • NBII Search screen with GBIF records here……


Us gbif tools and services

  • Current and future tasks

  • Provide various easy-to-use visualization tools and web services for extracting NA GBIF data (local, state, regional, country, and thematic level)

  • Enable county level GBIF data visualization and extraction

  • Extend the collaboration activities with new projects such as USVH, DataONE etc..

  • Enable species mashups on the NBII metadata records

  • Evaluate broader services for all GBIF data


Us gbif tools and services

Questions, Comments

Mike Frame

[email protected]

Giri Palanisamy

[email protected]


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