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Giri Palanisamy NBII , ORNL Mike Frame NBII, USGS. US GBIF Tools and Services. August 12 th , 2010. NBII-GBIF Services. Hosts GBIF mirror for North America Various data extraction services and visualizations IPT prototype installation Trainings/Workshops on DiGIR and IPT

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US GBIF Tools and Services

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Us gbif tools and services

Giri Palanisamy

NBII, ORNL

Mike Frame

NBII, USGS

US GBIF Tools and Services

August 12th , 2010


Nbii gbif services
NBII-GBIF Services

  • Hosts GBIF mirror for North America

  • Various data extraction services and visualizations

  • IPT prototype installation

  • Trainings/Workshops on DiGIR and IPT

  • Operates UDDI service

  • Supports several Cooperative agreements at Museum’s & Herbaria in US


Gbif data portal
GBIF Data Portal

GBIF Site: http://data.gbif.org

U.S. Mirror: http://us.mirror.gbif.org

World:

- 201,275,468 occurrence records

- 318 data providers

USA:

- 83,607,198 records

- 91 data providers


Web services to query gbif data
Web services to query GBIF data

OGC web services:

  • Taxon data service: http:// us.mirror.gbif.org/ws/rest/taxon

  • Occurrence record data service: http:// us.mirror.gbif.org/ws/rest/occurrence

  • Occurrence density data service: http:// us.mirror.gbif.org/ws/rest/density

  • Dataset metadata service: http:// us.mirror.gbif.org/ws/rest/resource

  • Data provider metadata service: http:// us.mirror.gbif.org/ws/rest/provider

  • Data network metadata service: http:// us.mirror.gbif.org/ws/rest/network

  • More information: http://wiki.gbif.org/dadiwiki/wikka.php?wakka=DeveloperAPIs

  • Web services to query US GBIF data (under development)


Gbif data analysis and extractions for nbii partners
GBIF Data Analysis And Extractions for NBII Partners

  • Example GBIF Data Extractions:

    • Extract data for specific State(s), countries.

    • Extract data for list of species (plants, birds, butterflies etc..)




Us gbif tools and services

Web Services to Query US GBIF Data

  • Based on NBII CH/Lucene/Solr index

  • Species occurrences query

    • http://nbii-gbif.ornl.gov/us_solr/select?indent=on&version=2.2&q=scientific_name%3A%22Abildgaardia ovata%22&start=0&rows=100&fl=latitude%2Clongitude&qt=standard&wt=standard&explainOther=&hl.fl=


Us gbif tools and services

Simple Web Services Client to get occurrence counts

http://mercury.ornl.gov/gbifUtility/


Us gbif tools and services

  • GBIF collection metadata records (EML) are now available in the NBII metadata clearinghouse and in the NBII catalog search.

  • IPT prototype installation available in the NBII servers (for testing prupose)





Us gbif tools and services

  • Provide various easy-to-use visualization tools and web services for extracting NA GBIF data (local, state, regional, country, and thematic level)

  • Enable county level GBIF data visualization and extraction

  • Extend the collaboration activities with new projects such as USVH, DataONE etc..

  • Enable species mashups on the NBII metadata records

  • Evaluate broader services for all GBIF data


Us gbif tools and services

Questions, Comments

Mike Frame

mike_frame@usgs.gov

Giri Palanisamy

palanisamyg@ornl.gov


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