Ensemble Learning (2), Tree and Forest. Classification and Regression Tree Bagging of trees Random Forest. Motivation. To estimate complex response surface and class boundary. Reminder: SVM achieves this goal by the kernel trick; Boosting achieves this goal by combining weak classifiers
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Ensemble Learning (2),Tree and Forest
Classification and Regression Tree
Bagging of trees
Random Forest
Motivation
Classification tree
Classification Tree
An example classification tree.
Classification tree
Issues:
How many splits should be allowed at a node?
Which property to use at a node?
When to stop splitting a node and declare it a “leaf”?
How to adjust the size of the tree?
Tree size <-> model complexity.
Too large a tree – over fitting;
Too small a tree –
not capture the underlying structure.
How to assign the classification decision at each leaf?
Missing data?
Classification Tree
Binary split.
Classification Tree
To decide what split criteria to use, need to establish the measurement of node impurity.
Entropy:
Misclassification:
Gini impurity:
(Expected error rate if class label is permuted.)
Classification Tree
Classification Tree
Growing the tree.
Greedy search: at every step, choose the query that decreases the impurity as much as possible.
For a real valued predictor, may use gradient descent to find the optimal cut value.
When to stop?
- Stop when reduction in impurity is smaller than a threshold.
- Stop when the leaf node is too small.
- Stop when a global criterion is met.
- Hypothesis testing.
- Cross-validation.
- Fully grow and then prune.
Classification Tree
Pruning the tree.
- Merge leaves when the loss of impurity is not severe.
- cost-complexity pruning allows elimination of a branch in a single step.
When priors and costs are present, adjust training by adjusting the Gini impurity
Assigning class label to a leaf.
- No prior: take the class with highest frequency at the node.
- With prior: weigh the frequency by prior
- With loss function.…
Always minimize the Bayes error.
Classification Tree
Choice or features.
Classification Tree
Multivariate tree.
Classification Tree
Example of error rate v.s. tree size.
Regression tree
Example: complex surface by CART.
Regression tree
Model the response as region-wise constant:
Due to computational difficulty, a greedy algorithm:
Consider splitting variable j and split point s,
Seek j and s that minimize RSS:
Simply scan through all j and the range of xj to find s.
After partition, treat each region as separate data and iterate.
Regression tree
Tree size <-> model complexity.
Too large a tree – over fitting;
Too small a tree – not capture the underlying structure.
How to tune?
- Grow the tree until RSS reduction becomes too small.
Too greedy and “short sighted”.
- Grow until leafs are too small, then prune the tree using
cost-complexity pruning.
Bootstraping
Basic thinking:
assuming the data approaches true underlying density, re-sampling from it will give us an idea of the uncertainty caused by sampling
Bootstrapping
Bagging
“Bootstrap aggregation.”
Resample the training dataset.
Build a prediction model on each resampled dataset.
Average the prediction.
It’s a Monte Carlo estimate of , where is the empirical distribution putting equal probability 1/N on each of the data points.
Bagging only differs from the original estimate when f() is a non-linear or adaptive function of the data! When f() is a linear function,
Tree is a perfect candidate for bagging – each bootstrap tree will differ in structure.
Bagging trees
Bagged trees are of different structure.
Bagging trees
Error curves.
Bagging trees
Failure in bagging a single-level tree.
Random Forest
Bagging can be seen as a method to reduce variance of an estimated prediction function. It mostly helps high-variance, low-bias classifiers.
Comparatively, boosting build weak classifiers one-by-one, allowing the collection to evolve to the right direction.
Random forest is a substantial modification to bagging – build a collection of de-correlated trees.
- Similar performance to boosting
- Simpler to train and tune compared to boosting
Random Forest
The intuition – the average of random variables.
B i.i.d. random variables, each with variance
The mean has variance
B i.d. random variables, each with variance , with pairwise correlation ,
The mean has variance
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Bagged trees are i.d. samples.
Random forest aims at reducing the correlation to reduce variance. This is achieved by random selection of variables.
Random Forest
Random Forest
Example comparing RF to boosted trees.
Random Forest
Example comparing RF to boosted trees.
Random Forest
Benefit of RF – out of bag (OOB) sample cross validation error.
For sample i, find its RF error from only trees built from samples where sample i did not appear.
The OOB error rate is close to N-fold cross validation error rate.
Unlike many other nonlinear estimators, RF can be fit in a single sequence. Stop growing forest when OOB error stabilizes.
Random Forest
Variable importance – find the most relevant predictors.
At every split of every tree, a variable contributed to the improvement of the impurity measure.
Accumulate the reduction of i(N) for every variable, we have a measure of relative importance of the variables.
The predictors that appears the most times at split points, and lead to the most reduction of impurity, are the ones that are important.
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Another method – Permute the predictor values of the OOB samples at every tree, the resulting decrease in prediction accuracy is also a measure of importance. Accumulate it over all trees.
Random Forest